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运用计算和突变方法研究细胞分裂蛋白 FtsZ 的构象灵活性和组装开关。

Mapping flexibility and the assembly switch of cell division protein FtsZ by computational and mutational approaches.

机构信息

Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, Ramiro de Maeztu, 9, 28040 Madrid, Spain.

出版信息

J Biol Chem. 2010 Jul 16;285(29):22554-65. doi: 10.1074/jbc.M110.117127. Epub 2010 May 13.

Abstract

The molecular switch for nucleotide-regulated assembly and disassembly of the main prokaryotic cell division protein FtsZ is unknown despite the numerous crystal structures that are available. We have characterized the functional motions in FtsZ with a computational consensus of essential dynamics, structural comparisons, sequence conservation, and networks of co-evolving residues. Employing this information, we have constructed 17 mutants, which alter the FtsZ functional cycle at different stages, to modify FtsZ flexibility. The mutant phenotypes ranged from benign to total inactivation and included increased GTPase, reduced assembly, and stabilized assembly. Six mutations clustering at the long cleft between the C-terminal beta-sheet and core helix H7 deviated FtsZ assembly into curved filaments with inhibited GTPase, which still polymerize cooperatively. These mutations may perturb the predicted closure of the C-terminal domain onto H7 required for switching between curved and straight association modes and for GTPase activation. By mapping the FtsZ assembly switch, this work also gives insight into FtsZ druggability because the curved mutations delineate the putative binding site of the promising antibacterial FtsZ inhibitor PC190723.

摘要

尽管有许多已解析的晶体结构,但核苷酸调节的主要原核细胞分裂蛋白 FtsZ 的组装和拆卸的分子开关仍然未知。我们使用功能运动的计算共识、结构比较、序列保守性和共进化残基网络来描述 FtsZ 的功能。利用这些信息,我们构建了 17 个突变体,这些突变体在不同阶段改变 FtsZ 的功能循环,从而改变 FtsZ 的柔韧性。突变体表型范围从良性到完全失活不等,包括 GTPase 增加、组装减少和组装稳定。六个位于 C 端β-片层和核心螺旋 H7 之间的长裂隙聚类的突变使 FtsZ 组装成具有抑制 GTPase 的弯曲丝状,其仍然具有协同聚合性。这些突变可能会干扰预测的 C 端结构域向 H7 的关闭,这是在弯曲和直线结合模式之间切换以及 GTPase 激活所必需的。通过绘制 FtsZ 组装开关,这项工作还为 FtsZ 的药物开发提供了深入的了解,因为弯曲突变划定了有前途的抗菌 FtsZ 抑制剂 PC190723 的潜在结合位点。

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