长双歧杆菌 JDM301 的全基因组序列。
Complete genome sequence of Bifidobacterium longum JDM301.
机构信息
Department of Medical Microbiology and Parasitology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China.
出版信息
J Bacteriol. 2010 Aug;192(15):4076-7. doi: 10.1128/JB.00538-10. Epub 2010 Jun 4.
Abstract
Bifidobacteria, known as probiotic bacteria, are high-G+C Gram-positive bacteria which naturally inhabit the human gastrointestinal tract and vagina. Recently, we completely sequenced Bifidobacterium longum JDM301, which is a widely used Chinese commercial strain with several probiotic properties.
摘要
双歧杆菌，又称益生菌，是高 GC 革兰氏阳性菌，天然存在于人体胃肠道和阴道中。最近，我们完成了长双歧杆菌 JDM301 的全序列测序，该菌是一种广泛使用的中国商业菌株，具有多种益生菌特性。
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J Microbiol Biotechnol. 2009 Jun;19(6):616-21. doi: 10.4014/jmb.0808.479.
2
Genomics of lactic acid bacteria.乳酸菌基因组学
FEMS Microbiol Lett. 2009 Mar;292(1):1-6. doi: 10.1111/j.1574-6968.2008.01442.x. Epub 2008 Dec 11.
3
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9
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10
Consed: a graphical tool for sequence finishing.Consed：一种用于序列完成的图形工具。
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