• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

链霉菌属阿佛曼链霉菌的基因组挖掘:新型倍半萜烯avermitilol 的合成酶 SAV_76 的克隆和特性研究。

Genome mining in Streptomyces avermitilis: cloning and characterization of SAV_76, the synthase for a new sesquiterpene, avermitilol.

机构信息

Department of Chemistry, Box H, Brown University, Providence, Rhode Island 02912-9108, USA.

出版信息

J Am Chem Soc. 2010 Jul 7;132(26):8850-1. doi: 10.1021/ja103087w.

DOI:10.1021/ja103087w
PMID:20536237
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2904616/
Abstract

The terpene synthase encoded by the sav76 gene of Streptomyces avermtilis was expressed in Escherichia coli as an N-terminal-His(6)-tag protein, using a codon-optimized synthetic gene. Incubation of the recombinant protein, SAV_76, with farnesyl diphosphate (1, FPP) in the presence of Mg(2+) gave a new sesquiterpene alcohol avermitilol (2), whose structure and stereochemistry were determined by a combination of (1)H, (13)C, COSY, HMQC, HMBC, and NOESY NMR, along with minor amounts of germacrene A (3), germacrene B (4), and viridiflorol (5). The absolute configuration of 2 was assigned by (1)H NMR analysis of the corresponding (R)- and (S)-Mosher esters. The steady state kinetic parameters were k(cat) 0.040 +/- 0.001 s(-1) and K(m) 1.06 +/- 0.11 microM. Individual incubations of recombinant avermitilol synthase with [1,1-(2)H(2)]FPP (1a), (1S)-[1-(2)H]-FPP (1b), and (1R)-[1-(2)H]-FPP (1c) and NMR analysis of the resulting avermitilols supported a cyclization mechanism involving the loss of H-1(re) to generate the intermediate bicyclogermacrene (7), which then undergoes proton-initiated anti-Markovnikov cyclization and capture of water to generate 2. A copy of the sav76 gene was reintroduced into S. avermitilis SUKA17, a large deletion mutant from which the genes for the major endogenous secondary metabolites had been removed, and expressed under control of the native S. avermitilis promoter rpsJp (sav4925). The resultant transformants generated avermitilol (2) as well as the derived ketone, avermitilone (8), along with small amounts of 3, 4, and 5. The biochemical function of all four terpene synthases found in the S. avermtilis genome have now been determined.

摘要

链霉菌属中 sav76 基因编码的萜烯合酶在大肠杆菌中作为 N 端 His6 标签蛋白表达,使用密码子优化的合成基因。在存在 Mg2+的情况下,用法呢基二磷酸(1,FPP)孵育重组蛋白 SAV_76,得到一种新的倍半萜醇avermitilol(2),其结构和立体化学通过(1)H、(13)C、COSY、HMQC、HMBC 和 NOESY NMR 的组合以及少量的 germacrene A(3)、 germacrene B(4)和 viridiflorol(5)来确定。通过相应的(R)-和(S)-Mosher 酯的(1)H NMR 分析确定了 2 的绝对构型。稳态动力学参数为 kcat0.040 +/- 0.001 s-1 和 K m1.06 +/- 0.11 microM。单独用 [1,1-(2)H2]FPP(1a)、(1S)-[1-(2)H]-FPP(1b)和(1R)-[1-(2)H]-FPP(1c)孵育重组 avermitilol 合酶,并对生成的 avermitilols 进行 NMR 分析,支持一种涉及 H-1(re) 丢失的环化机制生成中间体双环 germacrene(7),然后进行质子引发的反 Markovnikov 环化和水捕获生成 2。将 sav76 基因的一个副本重新引入到 S. avermitilis SUKA17 中,这是一个从其中去除了主要内源性次级代谢物基因的大型缺失突变体,并在天然 S. avermitilis 启动子 rpsJp(sav4925)的控制下表达。所得转化体生成 avermitilol(2)以及衍生的酮 avermitilone(8),以及少量的 3、4 和 5。链霉菌属基因组中发现的四种萜烯合酶的生化功能现已确定。

相似文献

1
Genome mining in Streptomyces avermitilis: cloning and characterization of SAV_76, the synthase for a new sesquiterpene, avermitilol.链霉菌属阿佛曼链霉菌的基因组挖掘:新型倍半萜烯avermitilol 的合成酶 SAV_76 的克隆和特性研究。
J Am Chem Soc. 2010 Jul 7;132(26):8850-1. doi: 10.1021/ja103087w.
2
Genome mining in Streptomyces clavuligerus: expression and biochemical characterization of two new cryptic sesquiterpene synthases.棒状链霉菌的基因组挖掘:两种新型隐秘倍半萜合酶的表达及生化特性分析
Chem Biol. 2011 Jan 28;18(1):32-7. doi: 10.1016/j.chembiol.2010.11.008.
3
Genome mining in Streptomyces coelicolor: molecular cloning and characterization of a new sesquiterpene synthase.天蓝色链霉菌中的基因组挖掘:一种新型倍半萜合酶的分子克隆与表征
J Am Chem Soc. 2006 May 10;128(18):6022-3. doi: 10.1021/ja061292s.
4
Mechanism and stereochemistry of the germacradienol/germacrene D synthase of Streptomyces coelicolor A3(2).天蓝色链霉菌A3(2)的吉马烯二醇/吉马烯D合酶的作用机制和立体化学
J Am Chem Soc. 2004 Mar 10;126(9):2678-9. doi: 10.1021/ja039929k.
5
Geosmin biosynthesis. Streptomyces coelicolor germacradienol/germacrene D synthase converts farnesyl diphosphate to geosmin.土臭素的生物合成。天蓝色链霉菌的牻牛儿基牻牛儿醇/法尼基二磷酸合酶将法尼基二磷酸转化为土臭素。
J Am Chem Soc. 2006 Jun 28;128(25):8128-9. doi: 10.1021/ja062669x.
6
Characterization of a silent sesquiterpenoid biosynthetic pathway in Streptomyces avermitilis controlling epi-isozizaene albaflavenone biosynthesis and isolation of a new oxidized epi-isozizaene metabolite.鉴定阿佛曼链霉菌中沉默的倍半萜生物合成途径,该途径调控表异泽兰烯-白屈菜黄素生物合成,并分离到一个新的氧化表异泽兰烯代谢产物。
Microb Biotechnol. 2011 Mar;4(2):184-91. doi: 10.1111/j.1751-7915.2010.00209.x. Epub 2010 Sep 27.
7
Mechanism of Germacradien-4-ol Synthase-Controlled Water Capture.吉马烯 -4-醇合酶控制水捕获的机制。
Biochemistry. 2016 Apr 12;55(14):2112-21. doi: 10.1021/acs.biochem.6b00115. Epub 2016 Mar 30.
8
Evolutionary and mechanistic insights from the reconstruction of α-humulene synthases from a modern (+)-germacrene A synthase.从现代 (+)-大根香叶烯合酶重建 α-葎草烯合酶的进化和机制见解。
J Am Chem Soc. 2014 Oct 15;136(41):14505-12. doi: 10.1021/ja5066366. Epub 2014 Oct 2.
9
Amorpha-4,11-diene synthase: mechanism and stereochemistry of the enzymatic cyclization of farnesyl diphosphate.紫穗槐-4,11-二烯合酶:法尼基二磷酸酶促环化反应的机制与立体化学
Arch Biochem Biophys. 2006 Apr 15;448(1-2):150-5. doi: 10.1016/j.abb.2005.07.015. Epub 2005 Aug 11.
10
Sesquiterpene Synthase-Catalyzed Conversion of a Farnesyl Diphosphate Analogue to a Nonnatural Terpenoid Ether.倍半萜合酶催化法呢基二磷酸类似物转化为非天然萜类醚
Methods Enzymol. 2018;608:83-95. doi: 10.1016/bs.mie.2018.05.004. Epub 2018 Jul 6.

引用本文的文献

1
Defining the biomarkers in anti-MRSA fractions of soil Streptomycetes by multivariate analysis.通过多变量分析确定土壤链霉菌抗耐甲氧西林金黄色葡萄球菌组分中的生物标志物。
Antonie Van Leeuwenhoek. 2025 May 10;118(6):77. doi: 10.1007/s10482-025-02087-8.
2
Positive regulation of a LuxR family protein, MilO, in mildiomycin biosynthesis.一种LuxR家族蛋白MilO在浅蓝菌素生物合成中的正调控作用。
Appl Environ Microbiol. 2025 Jan 31;91(1):e0165424. doi: 10.1128/aem.01654-24. Epub 2024 Dec 23.
3
The Recent Progress of Tricyclic Aromadendrene-Type Sesquiterpenoids: Biological Activities and Biosynthesis.三环芳烃型倍半萜类化合物的最新研究进展:生物活性与生物合成。
Biomolecules. 2024 Sep 7;14(9):1133. doi: 10.3390/biom14091133.
4
Organocatalytic enantio- and diastereoselective assembly of cyclopropane-incorporated polycyclic molecules isobenzopyrylium ions.有机催化的含环丙烷多环分子异苯并吡喃鎓离子的对映选择性和非对映选择性组装
Chem Sci. 2024 Aug 22;15(37):15274-9. doi: 10.1039/d4sc03746d.
5
Single Point Mutation Abolishes Water Capture in Germacradien-4-ol Synthase.单点突变消除了大根香叶烯-4-醇合酶中的水捕获功能。
Chembiochem. 2024 Dec 2;25(23):e202400290. doi: 10.1002/cbic.202400290. Epub 2024 Aug 7.
6
Bioactive Metabolites from Terrestrial and Marine Actinomycetes.陆地和海洋放线菌中的生物活性代谢产物。
Molecules. 2023 Aug 6;28(15):5915. doi: 10.3390/molecules28155915.
7
Actinomycetes as Producers of Biologically Active Terpenoids: Current Trends and Patents.作为生物活性萜类化合物生产者的放线菌:当前趋势与专利
Pharmaceuticals (Basel). 2023 Jun 12;16(6):872. doi: 10.3390/ph16060872.
8
Genome mining to identify valuable secondary metabolites and their regulation in Actinobacteria from different niches.通过基因组挖掘鉴定来自不同生态位的放线菌中具有价值的次生代谢产物及其调控机制。
Arch Microbiol. 2023 Mar 21;205(4):127. doi: 10.1007/s00203-023-03482-3.
9
Germacrene B - a central intermediate in sesquiterpene biosynthesis.吉马烯B——倍半萜生物合成的核心中间体。
Beilstein J Org Chem. 2023 Feb 20;19:186-203. doi: 10.3762/bjoc.19.18. eCollection 2023.
10
Identification and Characterization of Bifunctional Drimenol Synthases of Marine Bacterial Origin.海洋细菌双功能角鲨烯合酶的鉴定和特性研究。
ACS Chem Biol. 2022 May 20;17(5):1226-1238. doi: 10.1021/acschembio.2c00163. Epub 2022 Apr 21.

本文引用的文献

1
Characterization of a silent sesquiterpenoid biosynthetic pathway in Streptomyces avermitilis controlling epi-isozizaene albaflavenone biosynthesis and isolation of a new oxidized epi-isozizaene metabolite.鉴定阿佛曼链霉菌中沉默的倍半萜生物合成途径,该途径调控表异泽兰烯-白屈菜黄素生物合成,并分离到一个新的氧化表异泽兰烯代谢产物。
Microb Biotechnol. 2011 Mar;4(2):184-91. doi: 10.1111/j.1751-7915.2010.00209.x. Epub 2010 Sep 27.
2
Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism.基因组最小化链霉菌宿主用于异源表达次级代谢产物。
Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2646-51. doi: 10.1073/pnas.0914833107. Epub 2010 Jan 25.
3
Natural products version 2.0: connecting genes to molecules.天然产物 2.0 版:将基因与分子联系起来。
J Am Chem Soc. 2010 Mar 3;132(8):2469-93. doi: 10.1021/ja909118a.
4
New natural product biosynthetic chemistry discovered by genome mining.通过基因组挖掘发现的新天然产物生物合成化学。
Nat Prod Rep. 2009 Aug;26(8):977-86. doi: 10.1039/b713024b. Epub 2009 May 22.
5
Mosher ester analysis for the determination of absolute configuration of stereogenic (chiral) carbinol carbons.用于测定手性甲醇碳绝对构型的莫舍尔酯分析。
Nat Protoc. 2007;2(10):2451-8. doi: 10.1038/nprot.2007.354.
6
Geosmin biosynthesis in Streptomyces avermitilis. Molecular cloning, expression, and mechanistic study of the germacradienol/geosmin synthase.阿维链霉菌中地霉烯素的生物合成。金合欢醇/地霉烯素合酶的分子克隆、表达及机制研究。
J Antibiot (Tokyo). 2006 Aug;59(8):471-9. doi: 10.1038/ja.2006.66.
7
Structural biology and chemistry of the terpenoid cyclases.萜类环化酶的结构生物学与化学
Chem Rev. 2006 Aug;106(8):3412-42. doi: 10.1021/cr050286w.
8
A gene cluster for biosynthesis of the sesquiterpenoid antibiotic pentalenolactone in Streptomyces avermitilis.阿维链霉菌中倍半萜类抗生素戊内酯生物合成的基因簇。
Biochemistry. 2006 May 16;45(19):6179-86. doi: 10.1021/bi060419n.
9
Cytochrome p450 complement (CYPome) of the avermectin-producer Streptomyces avermitilis and comparison to that of Streptomyces coelicolor A3(2).阿维菌素产生菌阿维链霉菌的细胞色素P450补体(CYPome)及其与天蓝色链霉菌A3(2)的比较
Biochem Biophys Res Commun. 2003 Aug 1;307(3):610-9. doi: 10.1016/s0006-291x(03)01231-2.
10
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.阿维链霉菌工业微生物的全基因组序列及比较分析
Nat Biotechnol. 2003 May;21(5):526-31. doi: 10.1038/nbt820. Epub 2003 Apr 14.