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咸水鞘氨醇杆菌属,一种从潮滩沉积物中分离得到的新种,对 Choi 和 Cho 2006 年描述的该属进行了修正。

Lutibacter aestuarii sp. nov., isolated from a tidal flat sediment, and emended description of the genus Lutibacter Choi and Cho 2006.

机构信息

Korea Research Institute of Bioscience and Biotechnology (KRIBB), PO Box 115, Yuseong, Daejeon, Republic of Korea.

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2012 Feb;62(Pt 2):420-424. doi: 10.1099/ijs.0.030320-0. Epub 2011 Apr 1.

Abstract

A gram-negative, non-spore-forming, non-motile rod, designated MA-My1(T), was isolated from a tidal flat sediment of the South Sea, Korea. Strain MA-My1(T) grew optimally at pH 7.0-7.5, at 30 °C and with 2.0-3.0 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain MA-My1(T) clustered with Lutibacter litoralis CL-TF09(T) and Lutibacter maritimus S7-2(T), with which it exhibited 97.3 and 95.3 % 16S rRNA gene sequence similarity, respectively. Strain MA-My1(T) contained MK-6 as the predominant menaquinone and iso-C(15 : 0), iso-C(15 : 0) 3-OH and iso-C(16 : 0) 3-OH as the major fatty acids. The major polar lipids were phosphatidylethanolamine and two unidentified lipids. The DNA G+C content was 30.6 mol% and DNA-DNA relatedness between strain MA-My1(T) and L. litoralis JCM 13034(T) was 6.3±0.8 %. The differential phenotypic properties, together with phylogenetic and genotypic distinctiveness, distinguished strain MA-My1(T) from the members of the genus Lutibacter. On the basis of the data presented, strain MA-My1(T) is considered to represent a novel species of the genus Lutibacter, for which the name Lutibacter aestuarii sp. nov. is proposed. The type strain is MA-My1(T) ( = KCTC 23499(T)  = CCUG 60022(T)).

摘要

一株革兰氏阴性、非孢子形成、非运动的棒状菌,被命名为 MA-My1(T),从韩国南海的潮滩沉积物中分离得到。菌株 MA-My1(T)在 pH 值为 7.0-7.5、30°C 和 2.0-3.0%(w/v)NaCl 的条件下生长最佳。基于 16S rRNA 基因序列的系统发育分析表明,菌株 MA-My1(T)与 Lutibacter litoralis CL-TF09(T)和 Lutibacter maritimus S7-2(T)聚为一簇,其 16S rRNA 基因序列相似性分别为 97.3%和 95.3%。菌株 MA-My1(T)含有 MK-6 作为主要的menaquinone,以及 iso-C(15:0)、iso-C(15:0) 3-OH 和 iso-C(16:0) 3-OH 作为主要脂肪酸。主要的极性脂为磷脂酰乙醇胺和两种未鉴定的脂。DNA G+C 含量为 30.6 mol%,菌株 MA-My1(T)与 Lutibacter litoralis JCM 13034(T)之间的 DNA-DNA 同源性为 6.3±0.8%。表型特征、系统发育和基因型的差异将菌株 MA-My1(T)与 Lutibacter 属的其他成员区分开来。基于所提供的数据,菌株 MA-My1(T)被认为代表 Lutibacter 属的一个新种,提议将其命名为 Lutibacter aestuarii sp. nov.。其模式菌株为 MA-My1(T)(=KCTC 23499(T)=CCUG 60022(T))。

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