酵母核糖体表达程序中的启动子结构
Promoter architectures in the yeast ribosomal expression program.
作者信息
Bosio Maria Cristina, Negri Rodolfo, Dieci Giorgio
机构信息
Dipartimento di Biochimica e Biologia Molecolare; Università degli Studi di Parma; Parma.
出版信息
Transcription. 2011 Mar;2(2):71-77. doi: 10.4161/trns.2.2.14486.
Abstract
Ribosome biogenesis begins with the orchestrated expression of hundreds of genes, including the three large classes of ribosomal protein, ribosome biogenesis and snoRNA genes. Current knowledge about the corresponding promoters suggests the existence of novel class-specific transcriptional strategies and crosstalk between telomere length and cell growth control.
摘要
核糖体生物合成始于数百个基因的协调表达，包括三大类核糖体蛋白、核糖体生物合成基因和snoRNA基因。目前关于相应启动子的知识表明，存在新的类别特异性转录策略以及端粒长度与细胞生长控制之间的相互作用。
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1
A complete set of nascent transcription rates for yeast genes.酵母基因新生转录率的完整数据集。
PLoS One. 2010 Nov 16;5(11):e15442. doi: 10.1371/journal.pone.0015442.
2
Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae.多个富含 AT 序列的高度冗余功能作为酿酒酵母 TATA 缺失的 RPS5 启动子的核心启动子元件。
Nucleic Acids Res. 2011 Jan;39(1):59-75. doi: 10.1093/nar/gkq741. Epub 2010 Aug 30.
3
Mammalian Rap1 widens its impact.
Nat Cell Biol. 2010 Aug;12(8):733-5. doi: 10.1038/ncb2088.
4
Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.使用高分辨率平铺阵列对人类病原体白念珠菌编码和非编码转录区域进行实验注释。
Genome Biol. 2010;11(7):R71. doi: 10.1186/gb-2010-11-7-r71. Epub 2010 Jul 9.
5
TFIIA and the transactivator Rap1 cooperate to commit TFIID for transcription initiation.TFIIA 和转录激活因子 Rap1 合作，使 TFIID 启动转录。
Nature. 2010 Jun 17;465(7300):956-60. doi: 10.1038/nature09080.
6
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7
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8
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10
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