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结核分枝杆菌铁蛋白结构:与同源物的比较研究确定了参与亚铁氧化酶活性的扩展 C 末端。

Ferritin structure from Mycobacterium tuberculosis: comparative study with homologues identifies extended C-terminus involved in ferroxidase activity.

机构信息

Department of Biochemistry, University of Delhi South Campus, New Delhi, India.

出版信息

PLoS One. 2011 Apr 8;6(4):e18570. doi: 10.1371/journal.pone.0018570.

Abstract

Ferritins are recognized as key players in the iron storage and detoxification processes. Iron acquisition in the case of pathogenic bacteria has long been established as an important virulence mechanism. Here, we report a 3.0 Å crystal structure of a ferritin, annotated as Bacterioferritin B (BfrB), from Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis that continues to be one of the world's deadliest diseases. Similar to the other members of ferritin family, the Mtb BfrB subunit exhibits the characteristic fold of a four-helical bundle that possesses the ferroxidase catalytic centre. We compare the structure of Mtb BfrB with representatives of the ferritin family belonging to the archaea, eubacteria and eukarya. Unlike most other ferritins, Mtb BfrB has an extended C-terminus. To dissect the role of this extended C-terminus, truncated Mtb BfrB was purified and biochemical studies implicate this region in ferroxidase activity and iron release in addition to providing stability to the protein. Functionally important regions in a protein of known 3D-structure can be determined by estimating the degree of conservation of the amino-acid sites with its close homologues. Based on the comparative studies, we identify the slowly evolving conserved sites as well as the rapidly evolving variable sites and analyze their role in relation to structure and function of Mtb BfrB. Further, electrostatic computations demonstrate that although the electrostatic environment of catalytic residues is preserved within the family, extensive variability is exhibited by residues defining the channels and pores, in all likelihood keeping up with the diverse functions executed by these ferritins in varied environments.

摘要

铁蛋白被认为是铁储存和解毒过程中的关键分子。长期以来,病原菌获取铁一直被认为是一种重要的毒力机制。在这里,我们报道了结核分枝杆菌(Mtb)的一种铁蛋白,即 Bacterioferritin B(BfrB)的 3.0 Å 晶体结构。Mtb 是结核病的病原体,结核病仍然是世界上最致命的疾病之一。与铁蛋白家族的其他成员类似,Mtb BfrB 亚基表现出典型的四螺旋束折叠结构,具有亚铁氧化酶催化中心。我们将 Mtb BfrB 的结构与属于古菌、细菌和真核生物的铁蛋白家族的代表进行了比较。与大多数其他铁蛋白不同,Mtb BfrB 具有延伸的 C 末端。为了剖析这个延伸的 C 末端的作用,我们纯化了截断的 Mtb BfrB,并进行了生化研究,结果表明这个区域除了为蛋白质提供稳定性外,还参与了亚铁氧化酶活性和铁释放。通过估计与近亲同源物的氨基酸位点的保守程度,可以确定具有已知 3D 结构的蛋白质中的功能重要区域。基于比较研究,我们确定了缓慢进化的保守位点和快速进化的可变位点,并分析了它们在与 Mtb BfrB 的结构和功能的关系中的作用。此外,静电计算表明,尽管催化残基的静电环境在家族内得以保留,但定义通道和孔的残基表现出广泛的可变性,很可能跟上这些铁蛋白在不同环境中执行的多种功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/de2f/3072985/77c1f3df857c/pone.0018570.g001.jpg

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