• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

拟南芥 REF6 是一种组蛋白 H3 赖氨酸 27 去甲基化酶。

Arabidopsis REF6 is a histone H3 lysine 27 demethylase.

机构信息

State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.

出版信息

Nat Genet. 2011 Jun 5;43(7):715-9. doi: 10.1038/ng.854.

DOI:10.1038/ng.854
PMID:21642989
Abstract

Polycomb group (PcG)-mediated histone H3 lysine 27 trimethylation (H3K27me3) has a key role in gene repression and developmental regulation. There is evidence that H3K27me3 is actively removed in plants, but it is not known how this occurs. Here we show that RELATIVE OF EARLY FLOWERING 6 (REF6), also known as Jumonji domain-containing protein 12 (JMJ12), specifically demethylates H3K27me3 and H3K27me2, whereas its metazoan counterparts, the KDM4 proteins, are H3K9 and H3K36 demethylases. Plants overexpressing REF6 resembled mutants defective in H3K27me3-mediated gene silencing. Genetic interaction tests indicated that REF6 acts downstream of H3K27me3 methyltransferases. Mutations in REF6 caused ectopic and increased H3K27me3 level and decreased mRNA expression of hundreds of genes involved in regulating developmental patterning and responses to various stimuli. Our work shows that plants and metazoans use conserved mechanisms to regulate H3K27me3 dynamics but use distinct subfamilies of enzymes.

摘要

多梳抑制复合物(PcG)介导的组蛋白 H3 赖氨酸 27 三甲基化(H3K27me3)在基因沉默和发育调控中起关键作用。有证据表明,H3K27me3 在植物中被主动去除,但具体机制尚不清楚。本文中,我们发现 RELATIVE OF EARLY FLOWERING 6(REF6),又名 Jumonji 结构域蛋白 12(JMJ12),特异性地去除 H3K27me3 和 H3K27me2,而其后生动物同源物 KDM4 蛋白则为 H3K9 和 H3K36 去甲基酶。过量表达 REF6 的植物与 H3K27me3 介导的基因沉默缺陷突变体表型相似。遗传互作测试表明 REF6 位于 H3K27me3 甲基转移酶的下游。REF6 突变导致数百个参与调控发育模式和响应各种刺激的基因的 H3K27me3 水平异位增加和 mRNA 表达降低。我们的工作表明,植物和后生动物使用保守的机制来调节 H3K27me3 动力学,但使用不同的酶亚家族。

相似文献

1
Arabidopsis REF6 is a histone H3 lysine 27 demethylase.拟南芥 REF6 是一种组蛋白 H3 赖氨酸 27 去甲基化酶。
Nat Genet. 2011 Jun 5;43(7):715-9. doi: 10.1038/ng.854.
2
The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis.H3K27me3 去甲基酶 REF6 通过直接激活拟南芥中主要的衰老调控和功能基因来促进叶片衰老。
PLoS Genet. 2019 Apr 10;15(4):e1008068. doi: 10.1371/journal.pgen.1008068. eCollection 2019 Apr.
3
REF6 recognizes a specific DNA sequence to demethylate H3K27me3 and regulate organ boundary formation in Arabidopsis.REF6 通过识别特定的 DNA 序列来使 H3K27me3 去甲基化并调节拟南芥器官边界的形成。
Nat Genet. 2016 Jun;48(6):694-9. doi: 10.1038/ng.3556. Epub 2016 Apr 25.
4
The Histone H3K27 Demethylase REF6 Is a Positive Regulator of Light-Initiated Seed Germination in Arabidopsis.组蛋白 H3K27 去甲基酶 REF6 是拟南芥光起始种子萌发的正调控因子。
Cells. 2023 Jan 12;12(2):295. doi: 10.3390/cells12020295.
5
Dynamic and spatial restriction of Polycomb activity by plant histone demethylases.植物组蛋白去甲基酶对 Polycomb 活性的动态和空间限制。
Nat Plants. 2018 Sep;4(9):681-689. doi: 10.1038/s41477-018-0219-5. Epub 2018 Aug 13.
6
Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis.拟南芥中含Jumonji结构域的蛋白ELF6和REF6对油菜素内酯调节的基因表达的调控
Proc Natl Acad Sci U S A. 2008 May 27;105(21):7618-23. doi: 10.1073/pnas.0802254105. Epub 2008 May 8.
7
Repression of FLOWERING LOCUS T chromatin by functionally redundant histone H3 lysine 4 demethylases in Arabidopsis.拟南芥中功能冗余的组蛋白 H3 赖氨酸 4 去甲基酶对 FLOWERING LOCUS T 染色质的抑制。
PLoS One. 2009 Nov 25;4(11):e8033. doi: 10.1371/journal.pone.0008033.
8
Conserved and distinct roles of H3K27me3 demethylases regulating flowering time in Brassica rapa.H3K27me3 去甲基化酶在调控芸薹属植物开花时间中的保守和特异作用。
Plant Cell Environ. 2022 May;45(5):1428-1441. doi: 10.1111/pce.14258. Epub 2022 Feb 9.
9
A new role for histone demethylases in the maintenance of plant genome integrity.组蛋白去甲基化酶在维持植物基因组完整性中的新作用。
Elife. 2020 Oct 27;9:e58533. doi: 10.7554/eLife.58533.
10
A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis.一个植物特异性的组蛋白 H3 赖氨酸 4 去甲基化酶抑制拟南芥的花发育转变。
Plant J. 2010 May 1;62(4):663-73. doi: 10.1111/j.1365-313X.2010.04182.x. Epub 2010 Feb 24.

引用本文的文献

1
Retrograde signals control dynamic changes to the chromatin state at photosynthesis-associated loci.逆行信号控制光合作用相关基因座处染色质状态的动态变化。
Nat Commun. 2025 Jul 15;16(1):6527. doi: 10.1038/s41467-025-61831-w.
2
Integrating differential expression under drought with gene family expansion unique to drought-tolerant species prioritizes candidate genes for drought adaptation in Brassicaceae species.整合干旱条件下的差异表达与耐旱物种特有的基因家族扩张,可确定十字花科物种干旱适应性候选基因的优先级。
BMC Genomics. 2025 Jun 19;26(1):571. doi: 10.1186/s12864-025-11737-0.
3
Genome-wide association study reveals significant loci and candidate genes for fruit branch length in upland cotton.

本文引用的文献

1
Interpretation of developmental signaling at chromatin: the Polycomb perspective.染色质上发育信号的解读:多梳观点。
Dev Cell. 2010 Nov 16;19(5):651-61. doi: 10.1016/j.devcel.2010.10.012.
2
The Arabidopsis PRC1-like ring-finger proteins are necessary for repression of embryonic traits during vegetative growth.拟南芥 PRC1 样环指蛋白对于在营养生长过程中抑制胚胎特征是必需的。
Cell Res. 2010 Dec;20(12):1332-44. doi: 10.1038/cr.2010.151. Epub 2010 Nov 9.
3
Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing.
全基因组关联研究揭示了陆地棉果枝长度的显著位点和候选基因。
Plant Genome. 2025 Jun;18(2):e70041. doi: 10.1002/tpg2.70041.
4
The demethylase REF6 physically interacts with phyB to promote hypocotyl elongation under red light.去甲基化酶REF6与phyB发生物理相互作用,以促进红光下的下胚轴伸长。
Proc Natl Acad Sci U S A. 2025 Mar 18;122(11):e2417253122. doi: 10.1073/pnas.2417253122. Epub 2025 Mar 10.
5
Alternative silencing states of transposable elements in Arabidopsis associated with H3K27me3.拟南芥中转座元件与H3K27me3相关的不同沉默状态。
Genome Biol. 2025 Jan 20;26(1):11. doi: 10.1186/s13059-024-03466-6.
6
Epigenetics in the modern era of crop improvements.作物改良现代时代的表观遗传学。
Sci China Life Sci. 2025 Jan 8. doi: 10.1007/s11427-024-2784-3.
7
Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.植物LTR反转录转座子中长末端重复序列的检测、分类及其可解释机器学习分析
BioData Min. 2024 Dec 18;17(1):57. doi: 10.1186/s13040-024-00410-z.
8
Using Callus as an Ex Vivo System for Chromatin Analysis.利用愈伤组织作为染色质分析的离体系统。
Methods Mol Biol. 2025;2873:333-347. doi: 10.1007/978-1-0716-4228-3_18.
9
Sequencing CURLY LEAF-associated RNAs in Arabidopsis revealed prevalent intergenic RNAs from the nuclear mitochondrial sequence.对拟南芥中与卷曲叶相关的RNA进行测序,发现了来自核线粒体序列的大量基因间RNA。
Mol Cells. 2024 Dec;47(12):100131. doi: 10.1016/j.mocell.2024.100131. Epub 2024 Oct 18.
10
PHYTOCHROME-INTERACTING FACTOR 7 and RELATIVE OF EARLY FLOWERING 6 act in shade avoidance memory in Arabidopsis.光敏色素相互作用因子 7 和早期开花 6 的 RELATIVE 在拟南芥的避荫记忆中起作用。
Nat Commun. 2024 Sep 13;15(1):8032. doi: 10.1038/s41467-024-51834-4.
精氨酸甲基化由拟南芥 PRMT5 同源物介导,对正确的前体 mRNA 剪接至关重要。
Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19114-9. doi: 10.1073/pnas.1009669107. Epub 2010 Oct 18.
4
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome.拟南芥基因组中表观遗传修饰的自动催化分化。
EMBO J. 2010 Oct 20;29(20):3496-506. doi: 10.1038/emboj.2010.227. Epub 2010 Sep 10.
5
Growth habit determination by the balance of histone methylation activities in Arabidopsis.拟南芥中组蛋白甲基化活性平衡决定生长习性。
EMBO J. 2010 Sep 15;29(18):3208-15. doi: 10.1038/emboj.2010.198. Epub 2010 Aug 13.
6
JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis.JMJ14,一个 JmjC 结构域蛋白,在拟南芥中 RNA 沉默信号的 RNA 沉默和细胞间运动中是必需的。
Genes Dev. 2010 May 15;24(10):986-91. doi: 10.1101/gad.579910.
7
Histone methylation in higher plants.高等植物中的组蛋白甲基化。
Annu Rev Plant Biol. 2010;61:395-420. doi: 10.1146/annurev.arplant.043008.091939.
8
JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis.JMJ14是一种在拟南芥中调控开花时间的H3K4去甲基化酶。
Cell Res. 2010 Mar;20(3):387-90. doi: 10.1038/cr.2010.27. Epub 2010 Feb 23.
9
Dynamic landscapes of four histone modifications during deetiolation in Arabidopsis.拟南芥去黄化过程中四种组蛋白修饰的动态变化。
Plant Cell. 2009 Dec;21(12):3732-48. doi: 10.1105/tpc.109.066845. Epub 2009 Dec 11.
10
Chromatin remodeling in stem cell maintenance in Arabidopsis thaliana.拟南芥干细胞维持中的染色质重塑。
Mol Plant. 2009 Jul;2(4):600-609. doi: 10.1093/mp/ssp022. Epub 2009 Apr 28.