Department of Biotechnology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi 110029, India.
J Bacteriol. 2011 Sep;193(18):4849-58. doi: 10.1128/JB.05051-11. Epub 2011 Jul 15.
The DevR (DosR) response regulator initiates the bacterial adaptive response to a variety of signals, including hypoxia in in vitro models of dormancy. Its receiver domain works as a phosphorylation-mediated switch to activate the DNA binding property of its output domain. Receiver domains are characterized by the presence of several highly conserved residues, and these sequence features correlate with structure and hence function. In response regulators, interaction of phosphorylated aspartic acid at the active site with the conserved threonine is believed to be crucial for phosphorylation-mediated conformational change. DevR contains all the conserved residues, but the structure of its receiver domain in the unphosphorylated protein is strikingly different, and key threonine (T82), tyrosine (Y101), and lysine (K104) residues are placed uncharacteristically far from the D54 phosphorylation site. In view of the atypical location of T82 in DevR, the present study aimed to examine the importance of this residue in the activation mechanism. Mycobacterium tuberculosis expressing a DevR T82A mutant protein is defective in autoregulation and supports hypoxic induction of the DevR regulon only very weakly. These defects are ascribed to slow and partial phosphorylation and the failure of T82A mutant protein to bind cooperatively with DNA. Our results indicate that the T82 residue is crucial in implementing conformational changes in DevR that are essential for cooperative binding and for subsequent gene activation. We propose that the function of the T82 residue in the activation mechanism of DevR is conserved in spite of the unusual architecture of its receiver domain.
DevR(DosR)响应调节蛋白启动细菌对多种信号的适应性反应,包括体外休眠模型中的缺氧。其受体结构域作为一种磷酸化介导的开关,激活其输出结构域的 DNA 结合特性。受体结构域的特征是存在几个高度保守的残基,这些序列特征与结构相关,因此也与功能相关。在响应调节剂中,活性位点的磷酸化天冬氨酸与保守苏氨酸的相互作用被认为对磷酸化介导的构象变化至关重要。DevR 包含所有保守残基,但未磷酸化蛋白的受体结构域的结构却截然不同,关键的苏氨酸(T82)、酪氨酸(Y101)和赖氨酸(K104)残基的位置异常远离 D54 磷酸化位点。鉴于 T82 在 DevR 中的非典型位置,本研究旨在研究该残基在激活机制中的重要性。表达 DevR T82A 突变蛋白的结核分枝杆菌在自我调节中存在缺陷,并且仅非常弱地支持缺氧诱导 DevR 调控基因的表达。这些缺陷归因于缓慢和部分磷酸化以及 T82A 突变蛋白不能与 DNA 协同结合。我们的结果表明,T82 残基在 DevR 中实施构象变化至关重要,这些变化对于协同结合和随后的基因激活是必不可少的。我们提出,尽管其受体结构域的结构不寻常,但 T82 残基在 DevR 激活机制中的功能是保守的。