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基质辅助激光解吸/电离飞行时间质谱法检测属的方法建立与应用

Establishment and Application of Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry for Detection of Genus.

作者信息

Yu Keyi, Huang Zhenzhou, Li Ying, Fu Qingbo, Lin Lirong, Wu Shiyao, Dai Hang, Cai Hongyan, Xiao Yue, Lan Ruiting, Wang Duochun

机构信息

National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), State Key Laboratory for Infectious Disease Prevention and Control, Beijing, China.

Center for Human Pathogenic Culture Collection, China CDC, Beijing, China.

出版信息

Front Microbiol. 2021 Feb 18;12:625821. doi: 10.3389/fmicb.2021.625821. eCollection 2021.

Abstract

species are widely distributed in the aquatic environment and aquatic organisms. They are opportunistic human pathogens with increasing clinical infections reported in recent years. However, there is a lack of a rapid and accurate method to identify species. We evaluated here matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for rapid identification of A peptide mass reference spectra (PMRS) database was constructed for the type strains of 36 species. The main spectrum projection (MSP) cluster dendrogram showed that the type strains of species can be effectively distinguished according to the different MS fingerprinting. The PMRS database was validated using 125 test strains isolated from various sources and periods; 92.8% ( = 116) of the strains were correctly identified at the species level, compared with the results of multilocus sequence analysis (MLSA), which was previously shown to be a method for identifying at the species level. The misidentified strains ( = 9) by MALDI-TOF MS involved five species of two groups, i.e., -- and -. We then identified and defined species-specific biomarker peaks of the 36 species using the type strains and validated these selected biomarkers using 125 test strains. Our study demonstrated that MALDI-TOF MS was a reliable and powerful tool for the rapid identification of strains at the species level.

摘要

该菌种广泛分布于水生环境和水生生物中。它们是机会性人类病原体,近年来临床感染报告不断增加。然而,缺乏一种快速准确的方法来鉴定该菌种。我们在此评估了基质辅助激光解吸/电离飞行时间质谱(MALDI-TOF MS)用于快速鉴定该菌种。为36种该菌种的模式菌株构建了肽质量参考光谱(PMRS)数据库。主谱投影(MSP)聚类树状图显示,根据不同的MS指纹图谱可以有效区分该菌种的模式菌株。使用从不同来源和时期分离的125株测试菌株对PMRS数据库进行了验证;与多位点序列分析(MLSA)结果相比,92.8%(n = 116)的菌株在种水平上被正确鉴定,MLSA先前被证明是一种在种水平上鉴定该菌种的方法。MALDI-TOF MS误鉴定的菌株(n = 9)涉及两组的五个菌种,即--和-。然后,我们使用模式菌株鉴定并定义了36种该菌种的种特异性生物标志物峰,并使用125株测试菌株对这些选定的生物标志物进行了验证。我们的研究表明,MALDI-TOF MS是一种在种水平上快速鉴定该菌种菌株的可靠且强大的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e23/7930330/e73de6983347/fmicb-12-625821-g001.jpg

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