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俄克拉荷马大盐滩土壤细菌组合的非培养分析。

Culture-independent analysis of the soil bacterial assemblage at the Great Salt Plains of Oklahoma.

机构信息

Department of Biological Sciences, Wichita State University, Wichita, KS, USA.

出版信息

J Basic Microbiol. 2012 Feb;52(1):16-26. doi: 10.1002/jobm.201100175. Epub 2011 Sep 23.

Abstract

The Great Salt Plains (GSP) of Oklahoma is a natural inland terrestrial hypersaline environment that forms evaporite crusts of mainly NaCl. Previous work described GSP bacterial assemblages through the phylogenetic and phenetic characterization of 105 isolates from 46 phylotypes. The current report describes the same bacterial assemblages through culture-independent 16S rRNA gene clone libraries. Although from similar hypersaline mud flats, the bacterial libraries from two sites, WP3 and WP6, were quite different. The WP3 library was dominated by cyanobacteria, mainly Cyanothece and Euhalothece. The WP6 library was rich in anaerobic sulfur-cycle organisms, including abundant Desulfuromonas. This pattern likely reflects differences in abiotic factors, such as frequency of flooding and hydrologic push. While more than 100 OTUs were identified, the assemblages were not as diverse, based on Shannon indexes, as bacterial communities from oligohaline soils. Since natural inland hypersaline soils are relatively unstudied, it was not clear what kind of bacteria would be present. The bacterial assemblage is predominantly genera typically found in hypersaline systems, although some were relatives of microbes common in oligohaline and marine environments. The bacterial clones did not reflect wide functional diversity, beyond phototrophs, sulfur metabolizers, and numerous heterotrophs.

摘要

俄克拉荷马大盐滩(GSP)是一个天然的内陆陆地高盐环境,形成主要由 NaCl 组成的蒸发盐壳。以前的工作通过对来自 46 个类群的 105 个分离物的系统发育和表型特征描述了 GSP 细菌组合。本报告通过非培养 16S rRNA 基因克隆文库描述了相同的细菌组合。尽管来自类似的高盐泥滩,但来自两个地点 WP3 和 WP6 的细菌文库却有很大的不同。WP3 文库以蓝细菌为主,主要是 Cyanothece 和 Euhalothece。WP6 文库富含厌氧硫循环生物,包括丰富的脱硫单胞菌。这种模式可能反映了非生物因素的差异,例如洪水频率和水力学推动。虽然鉴定了超过 100 个 OTUs,但基于 Shannon 指数,该组合的多样性不如寡盐水土壤中的细菌群落。由于天然内陆高盐土壤相对未被研究,因此不清楚会有哪些细菌存在。细菌组合主要是通常在高盐系统中发现的属,尽管其中一些是在寡盐水和海洋环境中常见的微生物的近亲。细菌克隆并不反映除了光养生物、硫代谢物和众多异养生物之外的广泛功能多样性。

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