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多数据集数据收集策略可产生更好的衍射数据。

A multi-dataset data-collection strategy produces better diffraction data.

作者信息

Liu Zhi Jie, Chen Lirong, Wu Dong, Ding Wei, Zhang Hua, Zhou Weihong, Fu Zheng Qing, Wang Bi Cheng

机构信息

National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.

出版信息

Acta Crystallogr A. 2011 Nov;67(Pt 6):544-9. doi: 10.1107/S0108767311037469. Epub 2011 Oct 18.

DOI:10.1107/S0108767311037469
PMID:22011470
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3211246/
Abstract

A multi-dataset (MDS) data-collection strategy is proposed and analyzed for macromolecular crystal diffraction data acquisition. The theoretical analysis indicated that the MDS strategy can reduce the standard deviation (background noise) of diffraction data compared with the commonly used single-dataset strategy for a fixed X-ray dose. In order to validate the hypothesis experimentally, a data-quality evaluation process, termed a readiness test of the X-ray data-collection system, was developed. The anomalous signals of sulfur atoms in zinc-free insulin crystals were used as the probe to differentiate the quality of data collected using different data-collection strategies. The data-collection results using home-laboratory-based rotating-anode X-ray and synchrotron X-ray systems indicate that the diffraction data collected with the MDS strategy contain more accurate anomalous signals from sulfur atoms than the data collected with a regular data-collection strategy. In addition, the MDS strategy offered more advantages with respect to radiation-damage-sensitive crystals and better usage of rotating-anode as well as synchrotron X-rays.

摘要

本文提出并分析了一种用于大分子晶体衍射数据采集的多数据集(MDS)数据收集策略。理论分析表明,在固定X射线剂量下,与常用的单数据集策略相比,MDS策略可以降低衍射数据的标准偏差(背景噪声)。为了通过实验验证这一假设,开发了一种数据质量评估过程,称为X射线数据收集系统的就绪测试。使用无锌胰岛素晶体中硫原子的反常信号作为探针,以区分使用不同数据收集策略收集的数据质量。使用基于家庭实验室的旋转阳极X射线和同步加速器X射线系统进行的数据收集结果表明,与采用常规数据收集策略收集的数据相比,采用MDS策略收集的衍射数据包含来自硫原子的更准确的反常信号。此外,MDS策略在对辐射损伤敏感的晶体方面具有更多优势,并且能更好地利用旋转阳极以及同步加速器X射线。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f94/3211246/92785b7335be/a-67-00544-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f94/3211246/92785b7335be/a-67-00544-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3f94/3211246/92785b7335be/a-67-00544-fig1.jpg

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1
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Nature. 1981 Mar 12;290(5802):107-113. doi: 10.1038/290107a0.
2
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Experimental procedure for the characterization of radiation damage in macromolecular crystals.大分子晶体中辐射损伤特性的实验程序。
使用多小角数据采集从头开始相位确定的指南。
J Synchrotron Radiat. 2021 Sep 1;28(Pt 5):1284-1295. doi: 10.1107/S1600577521008067. Epub 2021 Aug 26.
4
Long-wavelength Mesh&Collect native SAD phasing from microcrystals.长波长网格&收集微晶体的原生 SAD 相。
Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):192-199. doi: 10.1107/S2059798319002031. Epub 2019 Feb 11.
5
Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis.反常衍射在生物分子结构分析中的当代应用
Methods Mol Biol. 2017;1607:377-399. doi: 10.1007/978-1-4939-7000-1_16.
6
EIGER detector: application in macromolecular crystallography.EIGER 探测器:在大分子晶体学中的应用。
Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1036-48. doi: 10.1107/S2059798316012304. Epub 2016 Aug 31.
7
Graphene-based microfluidics for serial crystallography.基于石墨烯的微流控技术用于串联结晶学。
Lab Chip. 2016 Aug 2;16(16):3082-96. doi: 10.1039/c6lc00451b.
8
Can I solve my structure by SAD phasing? Anomalous signal in SAD phasing.我能用单波长反常散射法(SAD)确定我的结构吗?SAD定相中的反常信号。
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9
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Curr Opin Struct Biol. 2015 Oct;34:60-8. doi: 10.1016/j.sbi.2015.07.003. Epub 2015 Jul 24.
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J Synchrotron Radiat. 2011 May;18(Pt 3):381-6. doi: 10.1107/S0909049511002251. Epub 2011 Mar 10.
4
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5
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Acta Crystallogr D Biol Crystallogr. 2006 Jul;62(Pt 7):707-16. doi: 10.1107/S0907444906014946. Epub 2006 Jun 20.
6
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7
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Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):499-506. doi: 10.1107/S0907444904000617. Epub 2004 Feb 25.
8
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Nat Struct Biol. 2001 Feb;8(2):156-60. doi: 10.1038/84152.