Max Planck Institute for Marine Microbiology, Laboratories for Microbiology, Biogeochemistry, and Microbial Habitats, 28359 Bremen, Germany.
Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):E1484-90. doi: 10.1073/pnas.1106032108. Epub 2011 Dec 12.
Microbial degradation of substrates to terminal products is commonly understood as a unidirectional process. In individual enzymatic reactions, however, reversibility (reverse reaction and product back flux) is common. Hence, it is possible that entire pathways of microbial degradation are associated with back flux from the accumulating product pool through intracellular intermediates into the substrate pool. We investigated carbon and sulfur back flux during the anaerobic oxidation of methane (AOM) with sulfate, one of the least exergonic microbial catabolic processes known. The involved enzymes must operate not far from the thermodynamic equilibrium. Such an energetic situation is likely to favor product back flux. Indeed, cultures of highly enriched archaeal-bacterial consortia, performing net AOM with unlabeled methane and sulfate, converted label from (14)C-bicarbonate and (35)S-sulfide to (14)C-methane and (35)S-sulfate, respectively. Back fluxes reached 5% and 13%, respectively, of the net AOM rate. The existence of catabolic back fluxes in the reverse direction of net reactions has implications for biogeochemical isotope studies. In environments where biochemical processes are close to thermodynamic equilibrium, measured fluxes of labeled substrates to products are not equal to microbial net rates. Detection of a reaction in situ by labeling may not even indicate a net reaction occurring in the direction of label conversion but may reflect the reverse component of a so far unrecognized net reaction. Furthermore, the natural isotopic composition of the substrate and product pool will be determined by both the forward and back flux. This finding may have to be considered in the interpretation of stable isotope records.
微生物将基质降解为末端产物通常被理解为一个单向过程。然而,在单个酶反应中,可逆性(反向反应和产物回流)很常见。因此,整个微生物降解途径都可能与从积累的产物池中通过细胞内中间体回流到基质池有关。我们研究了在硫酸盐存在下进行的甲烷厌氧氧化(AOM)过程中的碳和硫回流,硫酸盐是已知的最放能微生物分解代谢过程之一。所涉及的酶必须在远离热力学平衡的位置运作。这种能量情况很可能有利于产物回流。事实上,进行净 AOM 的高度富集古菌-细菌共培养物的培养物,用未标记的甲烷和硫酸盐转化了(14)C-碳酸氢盐和(35)S-硫化物的标记物,分别转化为(14)C-甲烷和(35)S-硫酸盐。回流分别达到净 AOM 速率的 5%和 13%。在净反应的反方向上存在分解代谢回流,这对生物地球化学同位素研究具有影响。在生物化学过程接近热力学平衡的环境中,标记底物到产物的测量通量不等于微生物净速率。通过标记原位检测到的反应甚至不一定表示正在发生向标记转化的净反应,而可能反映了尚未认识到的净反应的反向成分。此外,基质和产物池的自然同位素组成将由前向和后向通量共同决定。在解释稳定同位素记录时,可能需要考虑这一发现。