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神经元培养物计算机模拟中的突发和同步现象

Emergent bursting and synchrony in computer simulations of neuronal cultures.

机构信息

Department of Biomedical Engineering, Duke University, Durham NC, USA.

出版信息

Front Comput Neurosci. 2012 Apr 3;6:15. doi: 10.3389/fncom.2012.00015. eCollection 2012.

Abstract

Experimental studies of neuronal cultures have revealed a wide variety of spiking network activity ranging from sparse, asynchronous firing to distinct, network-wide synchronous bursting. However, the functional mechanisms driving these observed firing patterns are not well understood. In this work, we develop an in silico network of cortical neurons based on known features of similar in vitro networks. The activity from these simulations is found to closely mimic experimental data. Furthermore, the strength or degree of network bursting is found to depend on a few parameters: the density of the culture, the type of synaptic connections, and the ratio of excitatory to inhibitory connections. Network bursting gradually becomes more prominent as either the density, the fraction of long range connections, or the fraction of excitatory neurons is increased. Interestingly, biologically prevalent values of parameters result in networks that are at the transition between strong bursting and sparse firing. Using principal components analysis, we show that a large fraction of the variance in firing rates is captured by the first component for bursting networks. These results have implications for understanding how information is encoded at the population level as well as for why certain network parameters are ubiquitous in cortical tissue.

摘要

神经元培养的实验研究揭示了各种各样的放电网络活动,从稀疏的、异步的放电到明显的、全网络同步的爆发。然而,驱动这些观察到的放电模式的功能机制还不是很清楚。在这项工作中,我们根据体外类似网络的已知特征,开发了一个皮质神经元的计算机网络。这些模拟的活动被发现非常类似于实验数据。此外,网络爆发的强度或程度取决于几个参数:培养物的密度、突触连接的类型以及兴奋性神经元与抑制性神经元的比例。随着培养密度、长程连接比例或兴奋性神经元比例的增加,网络爆发逐渐变得更加显著。有趣的是,生物学上常见的参数值导致网络处于强爆发和稀疏放电之间的转变。通过主成分分析,我们表明,爆发网络的第一个成分可以捕捉到很大一部分放电率的方差。这些结果对于理解信息在群体水平上是如何编码的,以及为什么某些网络参数在皮质组织中如此普遍,都具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e652/3322356/f2c065518b18/fncom-06-00015-g0001.jpg

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