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Identification of fungi in shotgun metagenomics datasets.鸟枪法宏基因组学数据集中真菌的鉴定
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本文引用的文献

1
Fungi and allergic lower respiratory tract diseases.真菌与过敏性下呼吸道疾病。
J Allergy Clin Immunol. 2012 Feb;129(2):280-91; quiz 292-3. doi: 10.1016/j.jaci.2011.12.970.
2
Fungal melanonychia.真菌性黑甲。
J Am Acad Dermatol. 2012 May;66(5):830-41. doi: 10.1016/j.jaad.2010.11.018. Epub 2012 Jan 17.
3
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.使用具有无监督训练的从头算算法在新型真菌基因组中进行基因预测。
Genome Res. 2008 Dec;18(12):1979-90. doi: 10.1101/gr.081612.108. Epub 2008 Aug 29.
4
Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments.无处不在的腐生菌球腔菌属 Cladosporium sphaerospermum 的系统发育和生态学，及其来自高盐环境的七个新种的描述。
Stud Mycol. 2007;58:157-83. doi: 10.3114/sim.2007.58.06.
5
SOAP: short oligonucleotide alignment program.SOAP：短寡核苷酸比对程序。
Bioinformatics. 2008 Mar 1;24(5):713-4. doi: 10.1093/bioinformatics/btn025. Epub 2008 Jan 28.
6
Subcutaneous phaeohyphomycosis caused by Cladosporium sphaerospermum.由球形枝孢霉引起的皮下暗色丝孢霉病。
Mycoses. 2008 Jan;51(1):79-80. doi: 10.1111/j.1439-0507.2007.01417.x.
7
Genomic analysis of allergen genes in Aspergillus spp: the relevance of genomics to everyday research.曲霉菌属中变应原基因的基因组分析：基因组学与日常研究的相关性。
Med Mycol. 2007 Feb;45(1):17-26. doi: 10.1080/13693780600972907.
8
Intrabronchial lesion due to Cladosporium sphaerospermum in a healthy, non-asthmatic woman.一名健康、非哮喘女性因球形枝孢菌导致的支气管内病变。
Mycoses. 2003 Sep;46(8):348-50. doi: 10.1046/j.1439-0507.2003.00885.x.
9
Biosynthesis of fungal melanins and their importance for human pathogenic fungi.真菌黑色素的生物合成及其对人类致病真菌的重要性。
Fungal Genet Biol. 2003 Mar;38(2):143-58. doi: 10.1016/s1087-1845(02)00526-1.

从血培养中分离出的一种暗色丝孢菌——球形枝孢菌的测序。

Sequencing of Cladosporium sphaerospermum, a Dematiaceous fungus isolated from blood culture.

作者信息

Ng Kee Peng, Yew Su Mei, Chan Chai Ling, Soo-Hoo Tuck Soon, Na Shiang Ling, Hassan Hamimah, Ngeow Yun Fong, Hoh Chee-Choong, Lee Kok-Wei, Yee Wai-Yan

机构信息

Department of Medical Microbiology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.

出版信息

Eukaryot Cell. 2012 May;11(5):705-6. doi: 10.1128/EC.00081-12.

DOI:10.1128/EC.00081-12
PMID:22544899
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3346424/
Abstract

Cladosporium sphaerospermum is one of the most widely distributed allergens causing serious problems in patients with respiratory tract disease. We report the 26,644,473-bp draft genome sequence and gene annotation of C. sphaerospermum UM843. Analysis of the genome sequence led to the finding of genes associated with C. sphaerospermum's melanin biosynthesis, allergens, and antifungal drug resistance.

摘要

球形枝孢菌是分布最广泛的变应原之一，会给呼吸道疾病患者带来严重问题。我们报告了球形枝孢菌UM843的26,644,473碱基对草图基因组序列及基因注释。对该基因组序列的分析发现了与球形枝孢菌黑色素生物合成、变应原及抗真菌药物抗性相关的基因。