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通过分子动力学模拟观察到 FtsZ 二聚体的核苷酸依赖性构象和力的产生。

Nucleotide-dependent conformations of FtsZ dimers and force generation observed through molecular dynamics simulations.

机构信息

Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.

出版信息

Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9432-7. doi: 10.1073/pnas.1120761109. Epub 2012 May 30.

Abstract

The bacterial cytoskeletal protein FtsZ is a GTPase that is thought to provide mechanical constriction force via an unidentified mechanism. Purified FtsZ polymerizes into filaments with varying structures in vitro: while GTP-bound FtsZ assembles into straight or gently curved filaments, GDP-bound FtsZ forms highly curved filaments, prompting the hypothesis that a difference in the inherent curvature of FtsZ filaments provides mechanical force. However, no nucleotide-dependent structural transition of FtsZ monomers has been observed to support this force generation model. Here, we present a series of all-atom molecular dynamics simulations probing the effects of nucleotide binding on the structure of an FtsZ dimer. We found that the FtsZ-dimer structure is dependent on nucleotide-binding state. While a GTP-bound FtsZ dimer retained a firm monomer-monomer contact, a GDP-bound FtsZ dimer lost some of the monomer-monomer association, leading to a "hinge-opening" event that resulted in a more bent dimer, while leaving each monomer structure largely unaffected. We constructed models of FtsZ filaments and found that a GDP-FtsZ filament is much more curved than a GTP-FtsZ filament, with the degree of curvature matching prior experimental data. FtsZ dynamics were used to estimate the amount of force an FtsZ filament could exert when hydrolysis occurs (20-30 pN per monomer). This magnitude of force is sufficient to direct inward cell-wall growth during division, and to produce the observed degree of membrane pinching in liposomes. Taken together, our data provide molecular-scale insight on the origin of FtsZ-based constriction force, and the mechanism underlying prokaryotic cell division.

摘要

细菌细胞骨架蛋白 FtsZ 是一种 GTP 酶,它通过一种未知的机制提供机械收缩力。在体外,纯化的 FtsZ 聚合成具有不同结构的纤维:当 GTP 结合的 FtsZ 组装成直的或轻微弯曲的纤维时,GDP 结合的 FtsZ 形成高度弯曲的纤维,这促使人们假设 FtsZ 纤维的固有曲率差异提供了机械力。然而,尚未观察到 FtsZ 单体的核苷酸依赖性结构转变来支持这种力产生模型。在这里,我们展示了一系列全原子分子动力学模拟,研究核苷酸结合对 FtsZ 二聚体结构的影响。我们发现 FtsZ 二聚体结构取决于核苷酸结合状态。虽然 GTP 结合的 FtsZ 二聚体保持了牢固的单体-单体接触,但 GDP 结合的 FtsZ 二聚体失去了一些单体-单体的结合,导致“铰链打开”事件,从而导致更弯曲的二聚体,而每个单体结构基本不受影响。我们构建了 FtsZ 纤维模型,发现 GDP-FtsZ 纤维比 GTP-FtsZ 纤维更弯曲,曲率程度与先前的实验数据相匹配。FtsZ 动力学用于估计水解时 FtsZ 纤维可以施加的力的大小(每个单体 20-30 pN)。这种力的大小足以在分裂过程中指导细胞壁向内生长,并在脂质体中产生观察到的膜缢缩程度。总之,我们的数据提供了 FtsZ 基收缩力的起源和原核细胞分裂的潜在机制的分子尺度的见解。

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