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从葡萄酒和啤酒中分离出的酿酒酵母×卡氏酵母天然杂交株的比较基因组学揭示了不同的起源。

Comparative genomics among Saccharomyces cerevisiae × Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins.

机构信息

Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Parc Científic, P,O, Box 22085, E-46071, Valencia, Spain.

出版信息

BMC Genomics. 2012 Aug 20;13:407. doi: 10.1186/1471-2164-13-407.

Abstract

BACKGROUND

Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii gene fraction present in these hybrids.

RESULTS

Comparative genomic hybridization (CGH) and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two main groups of wine hybrids and different divergent lineages of brewing strains.

CONCLUSION

Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions.

摘要

背景

在葡萄酒和啤酒发酵中,经常检测到酿酒酵母×克鲁维酵母种间杂种。在不同的应激条件下,亲本菌株和杂种菌株之间存在显著的生理差异。在这项研究中,我们使用比较基因组杂交分析来评估不同的酿酒酵母×克鲁维酵母天然杂种从葡萄酒和啤酒发酵中分离出来,以推断它们的进化起源,并找出存在于这些杂种中的常见克鲁维酵母基因部分的潜在作用。

结果

本研究进行的比较基因组杂交(CGH)和倍性分析证实了大多数来自啤酒和葡萄酒的酿酒酵母×克鲁维酵母杂种的个体和差异染色体组成模式的存在。所有杂种都共享一组常见的酿酒酵母基因缺失,这些基因在迄今为止研究的葡萄酒菌株中也缺失或不存在,并且存在一组常见的克鲁维酵母基因,这些基因可能与它们在低温下生长的能力有关。最后,对杂种基因组中发生的染色体重排事件的最大简约分析表明,存在两个主要的葡萄酒杂种群和不同的酿造菌株分歧谱系。

结论

我们的数据表明,葡萄酒和啤酒酿酒酵母×克鲁维酵母杂种是由不同的稀有交配事件引起的,涉及一个二倍体葡萄酒酿酒酵母和一个单倍体或二倍体欧洲克鲁维酵母菌株。杂种保留了几个与冷适应有关的克鲁维酵母基因,以及与克鲁维酵母线粒体功能有关的基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd31/3468397/9962d2717765/1471-2164-13-407-1.jpg

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