Center for Information Services and High Performance Computing, Technical University Dresden, Dresden, Germany.
PLoS One. 2012;7(9):e42852. doi: 10.1371/journal.pone.0042852. Epub 2012 Sep 11.
Cellular Potts models (CPMs) are used as a modeling framework to elucidate mechanisms of biological development. They allow a spatial resolution below the cellular scale and are applied particularly when problems are studied where multiple spatial and temporal scales are involved. Despite the increasing usage of CPMs in theoretical biology, this model class has received little attention from mathematical theory. To narrow this gap, the CPMs are subjected to a theoretical study here. It is asked to which extent the updating rules establish an appropriate dynamical model of intercellular interactions and what the principal behavior at different time scales characterizes. It is shown that the longtime behavior of a CPM is degenerate in the sense that the cells consecutively die out, independent of the specific interdependence structure that characterizes the model. While CPMs are naturally defined on finite, spatially bounded lattices, possible extensions to spatially unbounded systems are explored to assess to which extent spatio-temporal limit procedures can be applied to describe the emergent behavior at the tissue scale. To elucidate the mechanistic structure of CPMs, the model class is integrated into a general multiscale framework. It is shown that the central role of the surface fluctuations, which subsume several cellular and intercellular factors, entails substantial limitations for a CPM's exploitation both as a mechanistic and as a phenomenological model.
细胞点格模型 (CPMs) 被用作阐明生物发育机制的建模框架。它们可以实现低于细胞尺度的空间分辨率,特别适用于研究涉及多个时空尺度的问题。尽管 CPM 在理论生物学中的应用越来越广泛,但这个模型类在数学理论中却很少受到关注。为了缩小这一差距,本文对 CPM 进行了理论研究。研究的问题是,更新规则在多大程度上建立了细胞间相互作用的适当动力学模型,以及不同时间尺度的主要行为特征是什么。结果表明,CPM 的长时间行为是退化的,即细胞连续死亡,与表征模型的特定相互依赖结构无关。虽然 CPM 自然定义在有限的、空间上有界的格点上,但探索了可能的扩展到空间无界系统,以评估时空极限过程在多大程度上可以应用于描述组织尺度上的涌现行为。为了阐明 CPM 的机械结构,将模型类集成到一个通用的多尺度框架中。结果表明,表面波动的核心作用包含了几个细胞内和细胞间的因素,这给 CPM 作为一种机械模型和现象学模型的应用带来了实质性的限制。