Dipartimento di Scienze e Tecnologie Chimiche, University of Rome, Tor Vergata, Via della Ricerca Scientifica, 00133 Rome, Italy.
J Am Chem Soc. 2012 Dec 26;134(51):20601-4. doi: 10.1021/ja310585e. Epub 2012 Dec 13.
Here we demonstrate multiple, complementary approaches by which to tune, extend, or narrow the dynamic range of aptamer-based sensors. Specifically, we employ both distal-site mutations and allosteric control to tune the affinity and dynamic range of a fluorescent aptamer beacon. We show that allosteric control, achieved by using a set of easily designed oligonucleotide inhibitors that competes against the folding of the aptamer, allows rational fine-tuning of the affinity of our model aptamer across 3 orders of magnitude of target concentration with greater precision than that achieved using mutational approaches. Using these methods, we generate sets of aptamers varying significantly in target affinity and then combine them to recreate several of the mechanisms employed by nature to narrow or broaden the dynamic range of biological receptors. Such ability to finely control the affinity and dynamic range of aptamers may find many applications in synthetic biology, drug delivery, and targeted therapies, fields in which aptamers are of rapidly growing importance.
在这里,我们展示了多种互补的方法,通过这些方法可以调整、扩展或缩小基于适配体的传感器的动态范围。具体来说,我们采用远端位点突变和变构调控来调整荧光适配体信标的亲和力和动态范围。我们表明,通过使用一组易于设计的寡核苷酸抑制剂来实现变构调控,这些抑制剂与适配体的折叠竞争,从而可以合理地微调我们模型适配体的亲和力,使其在 3 个数量级的目标浓度范围内具有比突变方法更高的精度。使用这些方法,我们生成了一系列在靶亲和力上差异显著的适配体,然后将它们组合在一起,重新创建了自然界中用于缩小或拓宽生物受体动态范围的几种机制。这种能够精细控制适配体亲和力和动态范围的能力可能在合成生物学、药物输送和靶向治疗等领域有广泛的应用,在这些领域中,适配体的重要性正在迅速增加。