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通过体外和计算机单分子拉伸实验深入了解染色质纤维结构。

Insights into chromatin fibre structure by in vitro and in silico single-molecule stretching experiments.

机构信息

Department of Chemistry, New York University, 100 Washington Square East, New York, NY 10003, U.S.A.

出版信息

Biochem Soc Trans. 2013 Apr;41(2):494-500. doi: 10.1042/BST20120349.

DOI:10.1042/BST20120349
PMID:23514142
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3683968/
Abstract

The detailed structure and dynamics of the chromatin fibre and their relation to gene regulation represent important open biological questions. Recent advances in single-molecule force spectroscopy experiments have addressed these questions by directly measuring the forces that stabilize and alter the folded states of chromatin, and by investigating the mechanisms of fibre unfolding. We present examples that demonstrate how complementary modelling approaches have helped not only to interpret the experimental findings, but also to advance our knowledge of force-induced events such as unfolding of chromatin with dynamically bound linker histones and nucleosome unwrapping.

摘要

染色质纤维的详细结构和动力学及其与基因调控的关系是重要的开放性生物学问题。近年来,单分子力谱实验的进展通过直接测量稳定和改变染色质折叠状态的力,并研究纤维展开的机制,解决了这些问题。我们展示了一些示例,表明互补的建模方法不仅有助于解释实验结果,还有助于推进我们对力诱导事件的认识,例如带有动态结合连接组蛋白的染色质展开和核小体解旋。

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Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes.通过对寡核小体的介观建模揭示了动态连接组蛋白结合和二价离子对 DNA 可及性和基因调控的关键作用。
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核蛋白复合物的大规模模拟:核糖体、核小体、染色质、染色体和 CRISPR。
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Correlation among DNA Linker Length, Linker Histone Concentration, and Histone Tails in Chromatin.染色质中DNA连接体长度、连接体组蛋白浓度与组蛋白尾巴之间的相关性
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