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高分辨率磁共振波谱组织代谢组学特征经质谱验证可区分膀胱癌与良性疾病。

HR-MAS NMR tissue metabolomic signatures cross-validated by mass spectrometry distinguish bladder cancer from benign disease.

机构信息

Departments of Chemistry and Biophysics, University of Michigan, Ann Arbor, Michigan 48109, USA.

出版信息

J Proteome Res. 2013 Jul 5;12(7):3519-28. doi: 10.1021/pr4004135. Epub 2013 Jun 18.

Abstract

Effective diagnosis and surveillance of bladder cancer (BCa) is currently challenged by detection methods that are of poor sensitivity, particularly for low-grade tumors, resulting in unnecessary invasive procedures and economic burden. We performed HR-MAS NMR-based global metabolomic profiling and applied unsupervised principal component analysis (PCA) and hierarchical clustering performed on NMR data set of bladder-derived tissues and identified metabolic signatures that differentiate BCa from benign disease. A partial least-squares discriminant analysis (PLS-DA) model (leave-one-out cross-validation) was used as a diagnostic model to distinguish benign and BCa tissues. Receiver operating characteristic curve generated either from PC1 loadings of PCA or from predicted Y-values resulted in an area under curve of 0.97. Relative quantification of more than 15 tissue metabolites derived from HR-MAS NMR showed significant differences (P < 0.001) between benign and BCa samples. Noticeably, striking metabolic signatures were observed even for early stage BCa tissues (Ta-T1), demonstrating the sensitivity in detecting BCa. With the goal of cross-validating metabolic signatures derived from HR-MAS NMR, we utilized the same tissue samples to analyze 8 metabolites through gas chromatography-mass spectrometry (GC-MS)-targeted analysis, which undoubtedly complements HR-MAS NMR-derived metabolomic information. Cross-validation through GC-MS clearly demonstrates the utility of a straightforward, nondestructive, and rapid HR-MAS NMR technique for clinical diagnosis of BCa with even greater sensitivity. In addition to its utility as a diagnostic tool, these studies will lead to a better understanding of aberrant metabolic pathways in cancer as well as the design and implementation of personalized cancer therapy through metabolic modulation.

摘要

目前,膀胱癌(BCa)的有效诊断和监测受到检测方法灵敏度差的挑战,特别是对于低级别肿瘤,导致不必要的侵入性程序和经济负担。我们进行了基于 HR-MAS NMR 的全局代谢组学分析,并对源自膀胱的组织的 NMR 数据集应用了无监督主成分分析(PCA)和层次聚类,鉴定了区分 BCa 与良性疾病的代谢特征。偏最小二乘判别分析(PLS-DA)模型(留一法交叉验证)被用作区分良性和 BCa 组织的诊断模型。来自 PCA 的 PC1 载荷或预测 Y 值的接收器操作特性曲线生成的曲线下面积为 0.97。来自 HR-MAS NMR 的 15 种以上组织代谢物的相对定量显示良性和 BCa 样本之间存在显着差异(P <0.001)。值得注意的是,即使是早期 BCa 组织(Ta-T1)也观察到了明显的代谢特征,表明其在检测 BCa 方面的灵敏度。为了验证 HR-MAS NMR 衍生的代谢特征的有效性,我们使用相同的组织样本通过气相色谱-质谱(GC-MS)靶向分析来分析 8 种代谢物,这无疑补充了 HR-MAS NMR 衍生的代谢组学信息。通过 GC-MS 的交叉验证清楚地证明了 HR-MAS NMR 技术在临床诊断 BCa 方面的简单、非破坏性和快速的实用性,甚至具有更高的灵敏度。除了作为诊断工具的实用性外,这些研究还将导致更好地了解癌症中的异常代谢途径以及通过代谢调节设计和实施个性化癌症治疗。

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