Guangdong Institute of Eco-Environmental and Soil Sciences, Guangzhou 510650, PR China.
Chemistry and Materials Institute, Sichuan Normal University, Chengdu 610068, PR China.
Int J Syst Evol Microbiol. 2013 Dec;63(Pt 12):4599-4605. doi: 10.1099/ijs.0.054676-0. Epub 2013 Aug 5.
A Gram-negative, straight to slightly curved rod-shaped bacterium, motile with peritrichous flagella, designated SgZ-6(T), was isolated from an electroactive biofilm and was characterized by means of a polyphasic approach. Growth occurred with 0-5.0 % (w/v) NaCl (optimum 1 %), at pH 6.0-10.0 (optimum pH 7.0) and at 10-42 °C (optimum 30 °C) in trypticase soya broth. Phylogenetic analyses based on the 16S rRNA and gyrB genes identified the isolate as a member of a novel species of the genus Pseudomonas. Strain SgZ-6(T) exhibited the highest 16S rRNA gene sequence similarity to 'Pseudomonas linyingensis' CGMCC 1.10701 (97.5 %), followed by Pseudomonas sagittaria JCM 18195(T) (97.4 %), P. oleovorans subsp. lubricantis DSM 21016(T) (96.6 %), P. tuomuerensis JCM 14085(T) (96.5 %) and P. alcaliphila JCM 10630(T) (96.4 %). Strain SgZ-6(T) showed the highest gyrB gene sequence similarity of 93.7 % to 'P. linyingensis' CGMCC 1.10701 among all type strains of genus Pseudomonas. DNA-DNA pairing studies showed that strain SgZ-6(T) displayed 47.1 and 40.3 % relatedness to 'P. linyingensis' CGMCC 1.10701 and P. sagittaria JCM 18195(T), respectively. The major isoprenoid quinone was ubiquinone 9 (Q-9). The whole-cell fatty acids consisted mainly of summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c), C16 : 0 and summed feature 8 (C18 : 1ω6c and/or C18 : 1ω7c). The DNA G+C content of the genomic DNA was 68.1 mol%. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain SgZ-6(T) is proposed to represent a novel species of the genus Pseudomonas, for which the name Pseudomonas guangdongensis sp. nov. is proposed. The type strain is SgZ-6(T) ( = CCTCC AB 2012022(T) = KACC 16606(T)). An emended description of the genus Pseudomonas is also proposed.
一株革兰氏阴性、稍直至微弯的杆状细菌,周身鞭毛运动,被命名为 SgZ-6(T),从电活性生物膜中分离出来,并通过多相分析进行了表征。该菌在胰蛋白酶大豆肉汤中,在 0-5.0%(w/v)NaCl(最佳 1%)、pH6.0-10.0(最佳 pH7.0)和 10-42°C(最佳 30°C)下生长。基于 16S rRNA 和 gyrB 基因的系统发育分析将该分离株鉴定为假单胞菌属的一个新种。SgZ-6(T) 菌株与“Pseudomonas linyingensis”CGMCC 1.10701(97.5%)的 16S rRNA 基因序列相似度最高,其次是“Pseudomonas sagittaria”JCM 18195(T)(97.4%)、“P. oleovorans”subsp. lubricantis DSM 21016(T)(96.6%)、“P. tuomuerensis”JCM 14085(T)(96.5%)和“P. alcaliphila”JCM 10630(T)(96.4%)。SgZ-6(T) 菌株与假单胞菌属所有模式菌株的 gyrB 基因序列相似度最高,为 93.7%,与“P. linyingensis”CGMCC 1.10701 最为相似。DNA-DNA 杂交研究表明,SgZ-6(T) 菌株与“P. linyingensis”CGMCC 1.10701 和“P. sagittaria”JCM 18195(T) 的相关性分别为 47.1%和 40.3%。主要的类异戊二烯醌是泛醌 9(Q-9)。全细胞脂肪酸主要由 sumed feature 3(C16:1ω6c 和/或 C16:1ω7c)、C16:0 和 summed feature 8(C18:1ω6c 和/或 C18:1ω7c)组成。基因组 DNA 的 G+C 含量为 68.1mol%。基于表型、化学分类和系统发育数据,SgZ-6(T) 菌株代表了假单胞菌属的一个新种,建议将其命名为广东假单胞菌新种。模式菌株为 SgZ-6(T)(=CCTCC AB 2012022(T)=KACC 16606(T))。还提出了对假单胞菌属的修订说明。