Triticeae Research Institute, Sichuan Agricultural University, Sichuan, People's Republic of China ; Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Sichuan, People's Republic of China.
PLoS One. 2013 Aug 19;8(8):e71139. doi: 10.1371/journal.pone.0071139. eCollection 2013.
Single- and low-copy genes are less likely to be subject to concerted evolution. Thus, they are appropriate tools to study the origin and evolution of polyploidy plant taxa. The plastid 3-phosphoglycerate kinase gene (Pgk-1) sequences from 44 accessions of Triticum and Aegilops, representing diploid, tetraploid, and hexaploid wheats, were used to estimate the origin of Triticum petropavlovskyi. Our phylogenetic analysis was carried out on exon+intron, exon and intron sequences, using maximum likelihood, Bayesian inference and haplotype networking. We found the D genome sequences of Pgk-1 genes from T. petropavlovskyi are similar to the D genome orthologs in T. aestivum, while their relationship with Ae. tauschii is more distant. The A genome sequences of T. petropavlovskyi group with those of T. polonicum, but its Pgk-1 B genome sequences to some extent diverge from those of other species of Triticum. Our data do not support for the origin of T. petropavlovskyi either as an independent allopolyploidization event between Ae. tauschii and T. polonicum, or as a monomendelian mutation in T. aestivum. We suggest that T. petropavlovskyi originated via spontaneous introgression from T. polonicum into T. aestivum. The dating of divergence among T. polonicum, T. petropavlovskyi, T. carthlicum, T. turgidum, and T. compactum indicates an age of 0.78 million years [corrected].
单拷贝和低拷贝基因不太可能受到协同进化的影响。因此,它们是研究多倍体植物类群起源和进化的合适工具。我们利用来自 44 份普通小麦和长穗偃麦草的质体 3-磷酸甘油酸激酶基因(Pgk-1)序列,对 Triticum petropavlovskyi 的起源进行了研究。我们利用最大似然法、贝叶斯推断和单倍型网络分析,分别在基因外显子+内含子、外显子和内含子序列上对该基因进行了分析。结果发现,T. petropavlovskyi 的 Pgk-1 基因 D 基因组序列与 T. aestivum 的 D 基因组直系同源物相似,而与 Ae. tauschii 的关系则较为疏远。T. petropavlovskyi 的 A 基因组序列与 T. polonicum 的相似,但它的 Pgk-1 B 基因组序列在一定程度上与其他普通小麦物种的序列有所不同。我们的数据不支持 T. petropavlovskyi 是 Ae. tauschii 和 T. polonicum 之间独立的异源多倍体化事件的起源,也不支持它是 T. aestivum 中单基因突变的起源。我们认为,T. petropavlovskyi 是通过 T. polonicum 向 T. aestivum 的自发基因渗入而产生的。T. polonicum、T. petropavlovskyi、T. carthlicum、T. turgidum 和 T. compactum 之间的分歧时间表明,其起源于 78 万年前。