From the Department of Microbiology, University of Georgia, Athens, Georgia 30602.
From the Department of Microbiology, University of Georgia, Athens, Georgia 30602.
J Biol Chem. 2013 Oct 18;288(42):30693-30699. doi: 10.1074/jbc.M113.500280. Epub 2013 Sep 6.
ThiC (4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase; EC 4.1.99.17) is a radical S-adenosylmethionine (AdoMet) enzyme that uses a 4Fe-4S cluster to reductively cleave AdoMet to methionine and a 5'-deoxyadenosyl radical that initiates catalysis. In plants and bacteria, ThiC converts the purine intermediate 5-aminoimidazole ribotide to 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate, an intermediate of thiamine pyrophosphate (coenzyme B1) biosynthesis. In this study, assay conditions were implemented that consistently generated 5-fold molar excess of HMP, demonstrating that ThiC undergoes multiple turnovers. ThiC activity was improved by in situ removal of product 5'-deoxyadenosine. The activity was inhibited by AdoMet metabolites S-adenosylhomocysteine, adenosine, 5'-deoxyadenosine, S-methyl-5'-thioadenosine, methionine, and homocysteine. Neither adenosine nor S-methyl-5'-thioadenosine had been shown to inhibit radical AdoMet enzymes, suggesting that ThiC is distinct from other family members. The parameters for improved ThiC activity and turnover described here will facilitate kinetic and mechanistic analyses of ThiC.
硫胺素焦磷酸合酶(ThiC;4-氨基-5-羟甲基-2-甲基嘧啶磷酸合酶;EC 4.1.99.17)是一种依赖于 4Fe-4S 簇的还原型 S-腺苷甲硫氨酸(AdoMet)酶,它能将 AdoMet 还原裂解为蛋氨酸和 5'-脱氧腺苷自由基,而后者则引发催化反应。在植物和细菌中,ThiC 将嘌呤中间产物 5-氨基咪唑核糖核苷酸转化为 4-氨基-5-羟甲基-2-甲基嘧啶磷酸,这是硫胺素焦磷酸(辅酶 B1)生物合成的中间产物。在这项研究中,实施了测定条件,该条件始终产生 5 倍摩尔过量的 HMP,表明 ThiC 经历了多次周转。通过原位去除产物 5'-脱氧腺苷,提高了 ThiC 的活性。AdoMet 代谢物 S-腺苷同型半胱氨酸、腺苷、5'-脱氧腺苷、S-甲基-5'-硫代腺苷、蛋氨酸和同型半胱氨酸抑制了 ThiC 的活性。腺苷和 S-甲基-5'-硫代腺苷都没有被证明可以抑制自由基 AdoMet 酶,这表明 ThiC 与其他家族成员不同。此处描述的提高 ThiC 活性和周转的参数将有助于对 ThiC 的动力学和机制分析。