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1
Spatial structure facilitates cooperation in a social dilemma: empirical evidence from a bacterial community.
PLoS One. 2013 Oct 22;8(10):e77042. doi: 10.1371/journal.pone.0077042. eCollection 2013.
2
Simulation of Yeast Cooperation in 2D.
Bull Math Biol. 2016 Mar;78(3):531-55. doi: 10.1007/s11538-016-0153-5. Epub 2016 Mar 17.
3
Green-beard effect predicts the evolution of traitorousness in the two-tag Prisoner's dilemma.
J Theor Biol. 2011 Nov 7;288:84-91. doi: 10.1016/j.jtbi.2011.07.023. Epub 2011 Aug 2.
4
Bacteria and game theory: the rise and fall of cooperation in spatially heterogeneous environments.
Interface Focus. 2014 Aug 6;4(4):20140029. doi: 10.1098/rsfs.2014.0029.
5
Spatial population expansion promotes the evolution of cooperation in an experimental Prisoner's Dilemma.
Curr Biol. 2013 May 20;23(10):919-23. doi: 10.1016/j.cub.2013.04.026. Epub 2013 May 9.
6
Are the better cooperators dormant or quiescent?
Math Biosci. 2019 Dec;318:108272. doi: 10.1016/j.mbs.2019.108272. Epub 2019 Oct 21.
7
Spatial self-organization favors heterotypic cooperation over cheating.
Elife. 2013 Nov 12;2:e00960. doi: 10.7554/eLife.00960.
8
Emergence of super cooperation of prisoner's dilemma games on scale-free networks.
PLoS One. 2015 Feb 2;10(2):e0116429. doi: 10.1371/journal.pone.0116429. eCollection 2015.
9
Spatial structure often inhibits the evolution of cooperation in the snowdrift game.
Nature. 2004 Apr 8;428(6983):643-6. doi: 10.1038/nature02360.
10
Invasion and expansion of cooperators in lattice populations: prisoner's dilemma vs. snowdrift games.
J Theor Biol. 2010 Oct 7;266(3):358-66. doi: 10.1016/j.jtbi.2010.06.042. Epub 2010 Jul 7.

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1
Spatial population dynamics of bacterial colonies with social antibiotic resistance.
Proc Natl Acad Sci U S A. 2025 Feb 18;122(7):e2417065122. doi: 10.1073/pnas.2417065122. Epub 2025 Feb 12.
3
Group-selection via aggregative propagule-formation enables cooperative multicellularity in an individual based, spatial model.
PLoS Comput Biol. 2024 May 7;20(5):e1012107. doi: 10.1371/journal.pcbi.1012107. eCollection 2024 May.
4
The collapse of cooperation during range expansion of Pseudomonas aeruginosa.
Nat Microbiol. 2024 May;9(5):1220-1230. doi: 10.1038/s41564-024-01627-8. Epub 2024 Mar 5.
5
Optogenetic spatial patterning of cooperation in yeast populations.
Nat Commun. 2024 Jan 2;15(1):75. doi: 10.1038/s41467-023-44379-5.
6
Formation and emergent dynamics of spatially organized microbial systems.
Interface Focus. 2023 Feb 10;13(2):20220062. doi: 10.1098/rsfs.2022.0062. eCollection 2023 Apr 6.
7
Global dynamics of microbial communities emerge from local interaction rules.
PLoS Comput Biol. 2022 Mar 4;18(3):e1009877. doi: 10.1371/journal.pcbi.1009877. eCollection 2022 Mar.
8
Microfluidics for Biotechnology: Bridging Gaps to Foster Microfluidic Applications.
Front Bioeng Biotechnol. 2020 Nov 13;8:589074. doi: 10.3389/fbioe.2020.589074. eCollection 2020.
9
Investigating the dynamics of microbial consortia in spatially structured environments.
Nat Commun. 2020 May 15;11(1):2418. doi: 10.1038/s41467-020-16200-0.
10
Short-range interactions govern the dynamics and functions of microbial communities.
Nat Ecol Evol. 2020 Mar;4(3):366-375. doi: 10.1038/s41559-019-1080-2. Epub 2020 Feb 10.

本文引用的文献

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OpenCFU, a new free and open-source software to count cell colonies and other circular objects.
PLoS One. 2013;8(2):e54072. doi: 10.1371/journal.pone.0054072. Epub 2013 Feb 15.
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Stabilization of cooperative virulence by the expression of an avirulent phenotype.
Nature. 2013 Feb 21;494(7437):353-6. doi: 10.1038/nature11913.
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Quorum-sensing and cheating in bacterial biofilms.
Proc Biol Sci. 2012 Dec 7;279(1748):4765-71. doi: 10.1098/rspb.2012.1976. Epub 2012 Oct 3.
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Can Simpson's paradox explain co-operation in Pseudomonas aeruginosa biofilms?
FEMS Immunol Med Microbiol. 2012 Jul;65(2):226-35. doi: 10.1111/j.1574-695X.2012.00970.x. Epub 2012 Apr 23.
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Anomalous spatial redistribution of competing bacteria under starvation conditions.
J Bacteriol. 2011 Apr;193(8):1878-83. doi: 10.1128/JB.01430-10. Epub 2011 Feb 11.
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A molecular mechanism that stabilizes cooperative secretions in Pseudomonas aeruginosa.
Mol Microbiol. 2011 Jan;79(1):166-79. doi: 10.1111/j.1365-2958.2010.07436.x. Epub 2010 Nov 2.
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Computer control of microscopes using µManager.
Curr Protoc Mol Biol. 2010 Oct;Chapter 14:Unit14.20. doi: 10.1002/0471142727.mb1420s92.
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A mixture of "cheats" and "co-operators" can enable maximal group benefit.
PLoS Biol. 2010 Sep 14;8(9):e1000486. doi: 10.1371/journal.pbio.1000486.
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Snowdrift game dynamics and facultative cheating in yeast.
Nature. 2009 May 14;459(7244):253-6. doi: 10.1038/nature07921. Epub 2009 Apr 6.
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Limited dispersal, budding dispersal, and cooperation: an experimental study.
Evolution. 2009 Apr;63(4):939-49. doi: 10.1111/j.1558-5646.2008.00548.x. Epub 2008 Oct 10.

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