Suppr超能文献

从模型规范到生物约束的尖峰神经元网络的模拟。

From model specification to simulation of biologically constrained networks of spiking neurons.

机构信息

Department of Automatic Control and Systems Engineering, University of Sheffield, Sheffield, UK,

出版信息

Neuroinformatics. 2014 Apr;12(2):307-23. doi: 10.1007/s12021-013-9208-z.

Abstract

A declarative extensible markup language (SpineML) for describing the dynamics, network and experiments of large-scale spiking neural network simulations is described which builds upon the NineML standard. It utilises a level of abstraction which targets point neuron representation but addresses the limitations of existing tools by allowing arbitrary dynamics to be expressed. The use of XML promotes model sharing, is human readable and allows collaborative working. The syntax uses a high-level self explanatory format which allows straight forward code generation or translation of a model description to a native simulator format. This paper demonstrates the use of code generation in order to translate, simulate and reproduce the results of a benchmark model across a range of simulators. The flexibility of the SpineML syntax is highlighted by reproducing a pre-existing, biologically constrained model of a neural microcircuit (the striatum). The SpineML code is open source and is available at http://bimpa.group.shef.ac.uk/SpineML .

摘要

一种用于描述大规模尖峰神经网络模拟的动力学、网络和实验的声明式可扩展标记语言 (SpineML),它建立在 NineML 标准之上。它利用了针对点神经元表示的抽象级别,但通过允许表达任意动力学来解决现有工具的局限性。XML 的使用促进了模型共享,具有人类可读性,并允许协作工作。语法使用高级自解释格式,允许直接生成代码或将模型描述转换为本机模拟器格式。本文演示了如何使用代码生成来跨一系列模拟器翻译、模拟和再现基准模型的结果。SpineML 语法的灵活性通过再现一个预先存在的、受生物学约束的神经微电路(纹状体)模型得到了强调。SpineML 代码是开源的,并可在 http://bimpa.group.shef.ac.uk/SpineML 上获得。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef5c/4003408/03efbff70de4/12021_2013_9208_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验