嗜树栖短柄产甲烷菌（Methanobrevibacter arboriphilicus）人源分离株的基因组序列草图，该古菌具有最低的G+C含量
Draft Genome Sequence of a Human-Associated Isolate of Methanobrevibacter arboriphilicus, the Lowest-G+C-Content Archaeon.
作者信息
Khelaifia Saber, Garibal Marc, Robert Catherine, Raoult Didier, Drancourt Michel
机构信息
Aix Marseille Université, URMITE, UMR63 CNRS 7278, IRD 198, INSERM 1095, Marseille, France.
出版信息
Genome Announc. 2014 Jan 23;2(1):e01181-13. doi: 10.1128/genomeA.01181-13.
Abstract
We report the draft genome sequence of Methanobrevibacter arboriphilicus strain ANOR1, isolated from the human gut. Its 2.21-Mb genome exhibits a 25.46% G+C content, the lowest value among archaea. The genome of M. arboriphilicus contains a total of 2,111 open reading frames and three clusters of regularly interspaced short palindromic repeat (CRISPR) loci with associated Cas proteins.
摘要
我们报告了从人类肠道分离出的嗜树栖甲烷短杆菌菌株ANOR1的基因组序列草图。其2.21 Mb的基因组G+C含量为25.46%，是古菌中最低的值。嗜树栖甲烷短杆菌的基因组总共包含2111个开放阅读框和三个带有相关Cas蛋白的规律间隔短回文重复序列（CRISPR）基因座簇。
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本文引用的文献
1
A versatile medium for cultivating methanogenic archaea.一种用于培养产甲烷古菌的多功能培养基。
PLoS One. 2013 Apr 17;8(4):e61563. doi: 10.1371/journal.pone.0061563. Print 2013.
2
Complete genome sequence of Methanomassiliicoccus luminyensis, the largest genome of a human-associated Archaea species.甲烷微菌属 luminyensis 的完整基因组序列，该菌是与人类相关的古菌物种中基因组最大的。
J Bacteriol. 2012 Sep;194(17):4745. doi: 10.1128/JB.00956-12.
3
Halophilic archaea in the human intestinal mucosa.人类肠道黏膜中的嗜盐古菌。
Environ Microbiol. 2010 Sep;12(9):2398-410. doi: 10.1111/j.1462-2920.2010.02212.x. Epub 2010 Apr 23.
4
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
5
Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut.史氏甲烷短杆菌对人类肠道的基因组和代谢适应性
Proc Natl Acad Sci U S A. 2007 Jun 19;104(25):10643-8. doi: 10.1073/pnas.0704189104. Epub 2007 Jun 11.
6
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Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):450-456. doi: 10.1099/ijs.0.63984-0.
7
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J Bacteriol. 2006 Jan;188(2):642-58. doi: 10.1128/JB.188.2.642-658.2006.
8
Isolation of Halobacterium salinarum retrieved directly from halite brine inclusions.直接从石盐卤水包裹体中获取盐沼盐杆菌。
Environ Microbiol. 2003 Nov;5(11):1094-102. doi: 10.1046/j.1462-2920.2003.00509.x.
9
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J Mol Evol. 1997 Jun;44(6):632-6. doi: 10.1007/pl00006186.
10
Methanogens: reevaluation of a unique biological group.产甲烷菌：对一个独特生物类群的重新评估。
Microbiol Rev. 1979 Jun;43(2):260-96. doi: 10.1128/mr.43.2.260-296.1979.
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