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霍乱弧菌基因组进化的动态变化

Dynamics in genome evolution of Vibrio cholerae.

作者信息

Banerjee Rachana, Das Bhabatosh, Balakrish Nair G, Basak Surajit

机构信息

Department of Bio-Physics, Molecular Biology and Bioinformatics, University of Calcutta, 92, Acharya Prafulla Chandra Road, Kolkata 700009, India.

Centre for Human Microbial Ecology, Translational Health Science and Technology Institute, 496, Phase III, Udyog Vihar, Gurgaon 122016, Haryana, India.

出版信息

Infect Genet Evol. 2014 Apr;23:32-41. doi: 10.1016/j.meegid.2014.01.006. Epub 2014 Jan 23.

Abstract

Vibrio cholerae, the etiological agent of the acute secretary diarrheal disease cholera, is still a major public health concern in developing countries. In former centuries cholera was a permanent threat even to the highly developed populations of Europe, North America, and the northern part of Asia. Extensive studies on the cholera bug over more than a century have made significant advances in our understanding of the disease and ways of treating patients. V. cholerae has more than 200 serogroups, but only few serogroups have caused disease on a worldwide scale. Until the present, the evolutionary relationship of these pandemic causing serogroups was not clear. In the last decades, we have witnessed a shift involving genetically and phenotypically varied pandemic clones of V. cholerae in Asia and Africa. The exponential knowledge on the genome of several representatives V. cholerae strains has been used to identify and analyze the key determinants for rapid evolution of cholera pathogen. Recent comparative genomic studies have identified the presence of various integrative mobile genetic elements (IMGEs) in V. cholerae genome, which can be used as a marker of differentiation of all seventh pandemic clones with very similar core genome. This review attempts to bring together some of the important researches in recent times that have contributed towards understanding the genetics, epidemiology and evolution of toxigenic V. cholerae strains.

摘要

霍乱弧菌是急性分泌性腹泻疾病霍乱的病原体,在发展中国家仍然是一个主要的公共卫生问题。在前几个世纪,霍乱甚至对欧洲、北美和亚洲北部的高度发达人口构成了持续威胁。一个多世纪以来,对霍乱病菌的广泛研究在我们对该疾病的理解以及治疗患者的方法方面取得了重大进展。霍乱弧菌有200多个血清群,但只有少数血清群在全球范围内引发过疾病。直到现在,这些引发大流行的血清群之间的进化关系还不清楚。在过去几十年里,我们目睹了亚洲和非洲霍乱弧菌在基因和表型上不同的大流行克隆的转变。关于几种代表性霍乱弧菌菌株基因组的指数级知识已被用于识别和分析霍乱病原体快速进化的关键决定因素。最近的比较基因组研究已经确定霍乱弧菌基因组中存在各种整合型移动遗传元件(IMGEs),这些元件可作为所有核心基因组非常相似的第七次大流行克隆分化的标志物。这篇综述试图汇集近期一些重要研究,这些研究有助于理解产毒性霍乱弧菌菌株的遗传学、流行病学和进化。

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