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宏基因组学在理解口腔健康和疾病中的应用。

Application of metagenomics in understanding oral health and disease.

机构信息

VCU Philips Institute; Virginia Commonwealth University; Richmond, VA USA; Center for the Study of Biological Complexity; Virginia Commonwealth University; Richmond, VA USA; Department of Microbiology and Immunology; Virginia Commonwealth University; Richmond, VA USA.

Periodontics Department; Virginia Commonwealth University; Richmond, VA USA.

出版信息

Virulence. 2014 Apr 1;5(3):424-32. doi: 10.4161/viru.28532. Epub 2014 Mar 18.

DOI:10.4161/viru.28532
PMID:24642489
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3979870/
Abstract

Oral diseases including periodontal disease and caries are some of the most prevalent infectious diseases in humans. Different microbial species cohabitate and form a polymicrobial biofilm called dental plaque in the oral cavity. Metagenomics using next generation sequencing technologies has produced bacterial profiles and genomic profiles to study the relationships between microbial diversity, genetic variation, and oral diseases. Several oral metagenomic studies have examined the oral microbiome of periodontal disease and caries. Gene annotations in these studies support the association of specific genes or metabolic pathways with oral health and with specific diseases. The roles of pathogenic species and functions of specific genes in oral disease development have been recognized by metagenomic analysis. A model is proposed in which three levels of interactions occur in the oral microbiome that determines oral health or disease.

摘要

口腔疾病包括牙周病和龋齿,是人类最常见的传染病之一。不同的微生物物种在口腔中共存,并形成一种被称为牙菌斑的多微生物生物膜。使用下一代测序技术的宏基因组学已经产生了细菌和基因组图谱,以研究微生物多样性、遗传变异与口腔疾病之间的关系。几项口腔宏基因组研究检查了牙周病和龋齿的口腔微生物组。这些研究中的基因注释支持特定基因或代谢途径与口腔健康和特定疾病的关联。通过宏基因组分析,已经认识到病原物种的作用和特定基因在口腔疾病发展中的功能。提出了一个模型,其中口腔微生物组中存在三个相互作用的层次,决定了口腔的健康或疾病状态。

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本文引用的文献

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Composition and development of oral bacterial communities.口腔细菌群落的组成与发育
Periodontol 2000. 2014 Feb;64(1):20-39. doi: 10.1111/j.1600-0757.2012.00453.x.
2
Protein-linked glycans in periodontal bacteria: prevalence and role at the immune interface.牙周细菌中的蛋白质连接聚糖:在免疫界面的普遍性及作用
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The relationship between periodontitis and diabetes: a brief review.牙周炎与糖尿病之间的关系:简要综述。
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Inactivation of cyclic Di-GMP binding protein TDE0214 affects the motility, biofilm formation, and virulence of Treponema denticola.环二鸟苷酸结合蛋白 TDE0214 的失活影响牙龈卟啉单胞菌的运动性、生物膜形成和毒力。
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Oral microbiome of deep and shallow dental pockets in chronic periodontitis.慢性牙周炎中深牙周袋和浅牙周袋的口腔微生物组。
PLoS One. 2013 Jun 6;8(6):e65520. doi: 10.1371/journal.pone.0065520. Print 2013.
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Curr Microbiol. 2013 Nov;67(5):537-42. doi: 10.1007/s00284-013-0393-7. Epub 2013 Jun 7.
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J Dent Res. 2013 Jul;92(7):616-21. doi: 10.1177/0022034513488119. Epub 2013 May 14.
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Metagenomic sequencing reveals microbiota and its functional potential associated with periodontal disease.宏基因组测序揭示了与牙周病相关的微生物群落及其功能潜力。
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