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离子通道门控机制:基于单通道记录的模型识别与参数估计

Ion-channel gating mechanisms: model identification and parameter estimation from single channel recordings.

作者信息

Ball F G, Sansom M S

机构信息

Department of Mathematics, University of Nottingham, U.K.

出版信息

Proc R Soc Lond B Biol Sci. 1989 May 22;236(1285):385-416. doi: 10.1098/rspb.1989.0029.

DOI:10.1098/rspb.1989.0029
PMID:2471982
Abstract

Patch-clamp data may be analysed in terms of Markov process models of channel gating mechanisms. We present a maximum likelihood algorithm for estimation of gating parameters from records where only a single channel is present. Computer simulated data for three different models of agonist receptor gated channels are used to demonstrate the performance of the procedure. Full details of the implementation of the algorithm are given for an example gating mechanism. The effects of omission of brief openings and closings from the single-channel data on parameter estimation are explored. A strategy for discriminating between alternative possible gating models, based upon use of the Schwarz criterion, is described. Omission of brief events is shown not to lead to incorrect model identification, except in extreme circumstances. Finally, the algorithm is extended to include channel gating models exhibiting multiple conductance levels.

摘要

膜片钳数据可以根据通道门控机制的马尔可夫过程模型进行分析。我们提出了一种最大似然算法,用于从仅存在单个通道的记录中估计门控参数。使用三种不同的激动剂受体门控通道模型的计算机模拟数据来证明该程序的性能。针对一个示例门控机制给出了算法实现的完整细节。探讨了单通道数据中遗漏短暂开放和关闭对参数估计的影响。描述了一种基于施瓦茨准则区分替代可能门控模型的策略。结果表明,除了在极端情况下,遗漏短暂事件不会导致错误的模型识别。最后,该算法被扩展到包括具有多个电导水平的通道门控模型。

相似文献

1
Ion-channel gating mechanisms: model identification and parameter estimation from single channel recordings.离子通道门控机制:基于单通道记录的模型识别与参数估计
Proc R Soc Lond B Biol Sci. 1989 May 22;236(1285):385-416. doi: 10.1098/rspb.1989.0029.
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Poisson sampling-based inference for single ion channel data with time interval omission.基于泊松抽样的单离子通道数据时间间隔省略推断
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Single-channel data and missed events: analysis of a two-state Markov model.单通道数据与漏报事件:双态马尔可夫模型分析
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Estimation of kinetic rate constants from multi-channel recordings by a direct fit of the time series.通过对时间序列进行直接拟合,从多通道记录中估计动力学速率常数。
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Continuum model of voltage-dependent gating. Macroscopic conductance, gating current, and single-channel behavior.电压依赖性门控的连续介质模型。宏观电导、门控电流和单通道行为。
Biophys J. 1989 Mar;55(3):489-98. doi: 10.1016/S0006-3495(89)82842-5.
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Maximum likelihood estimation and identification directly from single-channel recordings.直接从单通道记录进行最大似然估计和识别。
Proc Biol Sci. 1992 Aug 22;249(1325):125-32. doi: 10.1098/rspb.1992.0094.
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The use of dwell time cross-correlation functions to study single-ion channel gating kinetics.利用驻留时间互相关函数研究单离子通道门控动力学。
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Diffusion models of ion-channel gating and the origin of power-law distributions from single-channel recording.离子通道门控的扩散模型以及单通道记录中幂律分布的起源。
Proc Natl Acad Sci U S A. 1988 Mar;85(5):1503-7. doi: 10.1073/pnas.85.5.1503.
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Markov, fractal, diffusion, and related models of ion channel gating. A comparison with experimental data from two ion channels.马尔可夫、分形、扩散及相关的离子通道门控模型。与来自两种离子通道的实验数据的比较。
Biophys J. 1989 Dec;56(6):1229-43. doi: 10.1016/S0006-3495(89)82770-5.

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