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解析表皮葡萄球菌AT2来源的冷适应、有机溶剂稳定脂肪酶C末端缺失对其稳定性的影响。

Unscrambling the effect of C-terminal tail deletion on the stability of a cold-adapted, organic solvent stable lipase from Staphylococcus epidermidis AT2.

作者信息

Kamarudin Nor Hafizah Ahmad, Rahman Raja Noor Zaliha Raja Abd, Ali Mohd Shukuri Mohamad, Leow Thean Chor, Basri Mahiran, Salleh Abu Bakar

机构信息

Enzyme and Microbial Technology Research Centre, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.

出版信息

Mol Biotechnol. 2014 Aug;56(8):747-57. doi: 10.1007/s12033-014-9753-1.

Abstract

Terminal moieties of most proteins are long known to be disordered and flexible. To unravel the functional role of these regions on the structural stability and biochemical properties of AT2 lipase, four C-terminal end residues, (Ile-Thr-Arg-Lys) which formed a flexible, short tail-like random-coil segment were targeted for mutation. Swapping of the tail-like region had resulted in an improved crystallizability and anti-aggregation property along with a slight shift of the thermostability profile. The lipolytic activity of mutant (M386) retained by 43 % compared to its wild-type with 18 % of the remaining activity at 45 °C. In silico analysis conducted at 25 and 45 °C was found to be in accordance to the experimental findings in which the RMSD values of M386 were more stable throughout the total trajectory in comparison to its wild-type. Terminal moieties were also observed to exhibit large movement and flexibility as denoted by high RMSF values at both dynamics. Variation in organic solvent stability property was detected in M386 where the lipolytic activity was stimulated in the presence of 25 % (v/v) of DMSO, isopropanol, and diethyl ether. This may be worth due to changes in the surface charge residues at the mutation point which probably involve in protein-solvent interaction.

摘要

大多数蛋白质的末端部分长期以来都被认为是无序且灵活的。为了阐明这些区域对AT2脂肪酶结构稳定性和生化特性的功能作用,针对形成灵活的短尾状无规卷曲片段的四个C末端残基(异亮氨酸-苏氨酸-精氨酸-赖氨酸)进行了突变。尾状区域的交换导致结晶性和抗聚集性得到改善,同时热稳定性曲线略有偏移。与野生型相比,突变体(M386)的脂解活性保留了43%,在45℃时仍有18%的剩余活性。在25℃和45℃进行的计算机模拟分析结果与实验结果一致,其中M386在整个轨迹中的均方根偏差(RMSD)值比野生型更稳定。在两种动力学状态下,末端部分也表现出较大的运动和灵活性,这通过较高的均方根波动(RMSF)值得以体现。在M386中检测到有机溶剂稳定性特性的变化,在25%(v/v)的二甲基亚砜、异丙醇和乙醚存在下,其脂解活性受到刺激。这可能是由于突变点处表面电荷残基的变化,这可能涉及蛋白质与溶剂的相互作用。

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