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物种鉴定的演变典范——DNA条形码技术。

The changing epitome of species identification - DNA barcoding.

作者信息

Ajmal Ali M, Gyulai Gábor, Hidvégi Norbert, Kerti Balázs, Al Hemaid Fahad M A, Pandey Arun K, Lee Joongku

机构信息

Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia.

Institute of Genetics and Biotechnology, St. István University, Gödöllo H-2103, Hungary.

出版信息

Saudi J Biol Sci. 2014 Jul;21(3):204-31. doi: 10.1016/j.sjbs.2014.03.003. Epub 2014 Mar 31.

Abstract

The discipline taxonomy (the science of naming and classifying organisms, the original bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality of life of future human generation on the earth; yet over the past few decades, the teaching and research funding in taxonomy have declined because of its classical way of practice which lead the discipline many a times to a subject of opinion, and this ultimately gave birth to several problems and challenges, and therefore the taxonomist became an endangered race in the era of genomics. Now taxonomy suddenly became fashionable again due to revolutionary approaches in taxonomy called DNA barcoding (a novel technology to provide rapid, accurate, and automated species identifications using short orthologous DNA sequences). In DNA barcoding, complete data set can be obtained from a single specimen irrespective to morphological or life stage characters. The core idea of DNA barcoding is based on the fact that the highly conserved stretches of DNA, either coding or non coding regions, vary at very minor degree during the evolution within the species. Sequences suggested to be useful in DNA barcoding include cytoplasmic mitochondrial DNA (e.g. cox1) and chloroplast DNA (e.g. rbcL, trnL-F, matK, ndhF, and atpB rbcL), and nuclear DNA (ITS, and house keeping genes e.g. gapdh). The plant DNA barcoding is now transitioning the epitome of species identification; and thus, ultimately helping in the molecularization of taxonomy, a need of the hour. The 'DNA barcodes' show promise in providing a practical, standardized, species-level identification tool that can be used for biodiversity assessment, life history and ecological studies, forensic analysis, and many more.

摘要

学科分类学(对生物进行命名和分类的科学,是最初的生物信息学,也是所有生物学的基础)对于确保地球上未来人类世代的生活质量至关重要;然而在过去几十年里,分类学的教学和研究资金有所下降,因为其传统的实践方式多次使该学科成为一个有争议的话题,这最终引发了一些问题和挑战,因此分类学家在基因组学时代成为了濒危群体。现在,由于一种名为DNA条形码技术(一种利用短的直系同源DNA序列提供快速、准确和自动化物种鉴定的新技术)的分类学革命性方法,分类学突然又变得流行起来。在DNA条形码技术中,可以从单个标本中获取完整的数据集,而无需考虑形态或生活阶段特征。DNA条形码技术的核心思想基于这样一个事实,即DNA的高度保守区域,无论是编码区还是非编码区,在物种进化过程中变化非常小。被认为在DNA条形码技术中有用的序列包括细胞质线粒体DNA(如cox1)和叶绿体DNA(如rbcL、trnL-F、matK、ndhF和atpB rbcL),以及核DNA(ITS和管家基因如gapdh)。植物DNA条形码技术正在成为物种鉴定的缩影;因此,最终有助于分类学的分子化,这是当务之急。“DNA条形码”有望提供一种实用、标准化的物种水平鉴定工具,可用于生物多样性评估、生活史和生态研究、法医分析等诸多方面。

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