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Pinpointing needles in giant haystacks: use of text mining to reduce impractical screening workload in extremely large scoping reviews.在大干草堆中精确定位针:文本挖掘在极大规模范围综述中减少不切实际的筛选工作量的应用。
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Natural language processing in biomedicine: a unified system architecture overview.生物医学中的自然语言处理:统一系统架构概述。
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Data-driven medicinal chemistry in the era of big data.大数据时代的数据驱动药物化学
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Computer-based image studies on tumor nests mathematical features of breast cancer and their clinical prognostic value.基于计算机的图像研究对乳腺癌肿瘤巢的数学特征及其临床预后价值。
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DIVE: a data intensive visualization engine.DIVE:一个数据密集型可视化引擎。
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Influenza-like illness surveillance on Twitter through automated learning of naïve language.通过自动化学习原始语言对 Twitter 上的流感样疾病进行监测。
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Mining the ultimate phenome repository.挖掘终极表型组库。
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Knowledge and theme discovery across very large biological data sets using distributed queries: a prototype combining unstructured and structured data.使用分布式查询在超大型生物数据集上进行知识和主题发现:一个结合非结构化和结构化数据的原型
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Privacy-by-Design: Understanding Data Access Models for Secondary Data.设计即隐私:理解二次数据的数据访问模型
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医学领域的大数据正在推动巨大变革。

Big data in medicine is driving big changes.

作者信息

Martin-Sanchez F, Verspoor K

机构信息

Fernando Martin-Sanchez, Health and Biomedical Informatics Centre, The University of Melbourne, Parkville VIC 3010, Australia, E-mail:

出版信息

Yearb Med Inform. 2014 Aug 15;9(1):14-20. doi: 10.15265/IY-2014-0020.

DOI:10.15265/IY-2014-0020
PMID:25123716
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4287083/
Abstract

OBJECTIVES

To summarise current research that takes advantage of "Big Data" in health and biomedical informatics applications.

METHODS

Survey of trends in this work, and exploration of literature describing how large-scale structured and unstructured data sources are being used to support applications from clinical decision making and health policy, to drug design and pharmacovigilance, and further to systems biology and genetics.

RESULTS

The survey highlights ongoing development of powerful new methods for turning that large-scale, and often complex, data into information that provides new insights into human health, in a range of different areas. Consideration of this body of work identifies several important paradigm shifts that are facilitated by Big Data resources and methods: in clinical and translational research, from hypothesis-driven research to data-driven research, and in medicine, from evidence-based practice to practice-based evidence.

CONCLUSIONS

The increasing scale and availability of large quantities of health data require strategies for data management, data linkage, and data integration beyond the limits of many existing information systems, and substantial effort is underway to meet those needs. As our ability to make sense of that data improves, the value of the data will continue to increase. Health systems, genetics and genomics, population and public health; all areas of biomedicine stand to benefit from Big Data and the associated technologies.

摘要

目标

总结当前在健康与生物医学信息学应用中利用“大数据”的研究。

方法

调查此项工作的趋势,并探究描述大规模结构化和非结构化数据源如何用于支持从临床决策和健康政策到药物设计与药物警戒,乃至系统生物学和遗传学等应用的文献。

结果

该调查突出了将大规模且通常复杂的数据转化为能在一系列不同领域为人类健康提供新见解的信息的强大新方法的持续发展。对这一系列工作的思考确定了由大数据资源和方法促成的几个重要范式转变:在临床和转化研究中,从假设驱动的研究转向数据驱动的研究;在医学中,从循证实践转向基于实践的证据。

结论

大量健康数据规模的不断扩大及其可得性,需要超出许多现有信息系统限制的数据管理、数据关联和数据整合策略,并且正在付出巨大努力来满足这些需求。随着我们理解这些数据的能力提高,数据的价值将持续增加。卫生系统、遗传学与基因组学、人口与公共卫生;生物医学的所有领域都有望从大数据及相关技术中受益。