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人类毛发上细菌的宏基因组分析:法医学应用的定性评估

Metagenomic analyses of bacteria on human hairs: a qualitative assessment for applications in forensic science.

作者信息

Tridico Silvana R, Murray Dáithí C, Addison Jayne, Kirkbride Kenneth P, Bunce Michael

机构信息

Veterinary and Life Sciences, Murdoch University, Perth, WA 6150 Australia ; Trace and Environmental DNA laboratory, Department of Environment and Agriculture, Curtin University, Perth, WA 6845 Australia.

Veterinary and Life Sciences, Murdoch University, Perth, WA 6150 Australia.

出版信息

Investig Genet. 2014 Dec 16;5(1):16. doi: 10.1186/s13323-014-0016-5. eCollection 2014.

Abstract

BACKGROUND

Mammalian hairs are one of the most ubiquitous types of trace evidence collected in the course of forensic investigations. However, hairs that are naturally shed or that lack roots are problematic substrates for DNA profiling; these hair types often contain insufficient nuclear DNA to yield short tandem repeat (STR) profiles. Whilst there have been a number of initial investigations evaluating the value of metagenomics analyses for forensic applications (e.g. examination of computer keyboards), there have been no metagenomic evaluations of human hairs-a substrate commonly encountered during forensic practice. This present study attempts to address this forensic capability gap, by conducting a qualitative assessment into the applicability of metagenomic analyses of human scalp and pubic hair.

RESULTS

Forty-two DNA extracts obtained from human scalp and pubic hairs generated a total of 79,766 reads, yielding 39,814 reads post control and abundance filtering. The results revealed the presence of unique combinations of microbial taxa that can enable discrimination between individuals and signature taxa indigenous to female pubic hairs. Microbial data from a single co-habiting couple added an extra dimension to the study by suggesting that metagenomic analyses might be of evidentiary value in sexual assault cases when other associative evidence is not present.

CONCLUSIONS

Of all the data generated in this study, the next-generation sequencing (NGS) data generated from pubic hair held the most potential for forensic applications. Metagenomic analyses of human hairs may provide independent data to augment other forensic results and possibly provide association between victims of sexual assault and offender when other associative evidence is absent. Based on results garnered in the present study, we believe that with further development, bacterial profiling of hair will become a valuable addition to the forensic toolkit.

摘要

背景

哺乳动物毛发是法医调查过程中收集到的最常见的微量证据类型之一。然而,自然脱落或无根的毛发是DNA分析的难题样本;这些毛发类型通常含有不足的核DNA以产生短串联重复序列(STR)图谱。虽然已经有一些初步研究评估宏基因组分析在法医应用中的价值(例如检查电脑键盘),但尚未对人发进行宏基因组评估——人发是法医实践中常见的样本。本研究试图通过对人类头皮和阴毛的宏基因组分析的适用性进行定性评估来填补这一法医能力空白。

结果

从人类头皮和阴毛中获得的42份DNA提取物共产生了79,766条读数,经过对照和丰度过滤后得到39,814条读数。结果显示存在独特的微生物分类群组合,能够区分个体以及女性阴毛特有的标志性分类群。来自一对同居夫妇的微生物数据为该研究增添了新的维度,表明在没有其他关联证据的性侵犯案件中,宏基因组分析可能具有证据价值。

结论

在本研究产生的所有数据中,阴毛产生的下一代测序(NGS)数据在法医应用中最具潜力。人发的宏基因组分析可能提供独立数据以增强其他法医结果,并可能在没有其他关联证据时为性侵犯受害者和犯罪者之间建立关联。基于本研究获得的结果,我们相信随着进一步发展,毛发细菌分析将成为法医工具包中有价值的补充。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf0c/4266914/bbf5e60cd49d/13323_2014_16_Fig1_HTML.jpg

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