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高效生产单链噬菌体DNA作为DNA折纸术的支架

Efficient Production of Single-Stranded Phage DNA as Scaffolds for DNA Origami.

作者信息

Kick Benjamin, Praetorius Florian, Dietz Hendrik, Weuster-Botz Dirk

机构信息

†Institute of Biochemical Engineering, Technische Universität München, Boltzmannstr. 15, 85748 Garching, Germany.

‡Physik Department, Walter Schottky Institute, Technische Universität München, Am Coulombwall 4a, 85748 Garching, Germany.

出版信息

Nano Lett. 2015 Jul 8;15(7):4672-6. doi: 10.1021/acs.nanolett.5b01461. Epub 2015 Jun 3.

Abstract

Scaffolded DNA origami enables the fabrication of a variety of complex nanostructures that promise utility in diverse fields of application, ranging from biosensing over advanced therapeutics to metamaterials. The broad applicability of DNA origami as a material beyond the level of proof-of-concept studies critically depends, among other factors, on the availability of large amounts of pure single-stranded scaffold DNA. Here, we present a method for the efficient production of M13 bacteriophage-derived genomic DNA using high-cell-density fermentation of Escherichia coli in stirred-tank bioreactors. We achieve phage titers of up to 1.6 × 10(14) plaque-forming units per mL. Downstream processing yields up to 410 mg of high-quality single-stranded DNA per one liter reaction volume, thus upgrading DNA origami-based nanotechnology from the milligram to the gram scale.

摘要

支架式DNA折纸技术能够制造出各种复杂的纳米结构,有望在从生物传感、先进治疗到超材料等不同应用领域发挥作用。DNA折纸作为一种超越概念验证研究层面的材料,其广泛适用性在很大程度上取决于能否获得大量纯单链支架DNA等因素。在此,我们展示了一种利用搅拌罐生物反应器中大肠杆菌的高细胞密度发酵高效生产M13噬菌体衍生基因组DNA的方法。我们实现了高达每毫升1.6×10¹⁴个噬菌斑形成单位的噬菌体滴度。下游处理每升反应体积可产生高达410毫克的高质量单链DNA,从而将基于DNA折纸的纳米技术从毫克规模提升到克规模。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f4b/4532261/cb942a0bdb6c/nl-2015-01461d_0001.jpg

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