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使用高斯过程模拟器对心脏细胞模型进行贝叶斯敏感性分析。

Bayesian Sensitivity Analysis of a Cardiac Cell Model Using a Gaussian Process Emulator.

作者信息

Chang Eugene T Y, Strong Mark, Clayton Richard H

机构信息

Insigneo Institute for in-silico Medicine, University of Sheffield, Sheffield, United Kingdom; Department of Computer Science University of Sheffield, Sheffield, United Kingdom.

School of Health and Related Research, University of Sheffield, Sheffield, United Kingdom.

出版信息

PLoS One. 2015 Jun 26;10(6):e0130252. doi: 10.1371/journal.pone.0130252. eCollection 2015.

Abstract

Models of electrical activity in cardiac cells have become important research tools as they can provide a quantitative description of detailed and integrative physiology. However, cardiac cell models have many parameters, and how uncertainties in these parameters affect the model output is difficult to assess without undertaking large numbers of model runs. In this study we show that a surrogate statistical model of a cardiac cell model (the Luo-Rudy 1991 model) can be built using Gaussian process (GP) emulators. Using this approach we examined how eight outputs describing the action potential shape and action potential duration restitution depend on six inputs, which we selected to be the maximum conductances in the Luo-Rudy 1991 model. We found that the GP emulators could be fitted to a small number of model runs, and behaved as would be expected based on the underlying physiology that the model represents. We have shown that an emulator approach is a powerful tool for uncertainty and sensitivity analysis in cardiac cell models.

摘要

心脏细胞电活动模型已成为重要的研究工具,因为它们能够对详细的综合生理学进行定量描述。然而,心脏细胞模型有许多参数,如果不进行大量的模型运行,很难评估这些参数的不确定性如何影响模型输出。在本研究中,我们表明可以使用高斯过程(GP)模拟器构建心脏细胞模型(Luo-Rudy 1991模型)的替代统计模型。使用这种方法,我们研究了描述动作电位形状和动作电位时程恢复的八个输出如何依赖于六个输入,我们选择这六个输入为Luo-Rudy 1991模型中的最大电导率。我们发现,GP模拟器可以拟合少量的模型运行,并且其行为符合该模型所代表的基础生理学预期。我们已经表明,模拟器方法是心脏细胞模型不确定性和敏感性分析的有力工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f00f/4482712/c81281677282/pone.0130252.g001.jpg

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