Yang Guiqin, Chen Shanshan, Zhou Shungui, Liu Yongfeng
Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, 510640 China ; Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-Environmental and Soil Sciences, Guangzhou, 510650 China ; University of Chinese Academy of Sciences, Beijing, 100049 China.
Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-Environmental and Soil Sciences, Guangzhou, 510650 China.
Stand Genomic Sci. 2015 Dec 2;10:118. doi: 10.1186/s40793-015-0117-7. eCollection 2015.
Strain GSS01(T) (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01(T) is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron donors. Here we describe some key features of this strain, together with the whole genome sequence and annotation. The genome of size 3,657,100 bp contains 3229 protein-coding and 54 RNA genes, including 2 16S rRNA genes. The genome of strain GSS01(T)contains 76 predicted cytochrome genes, 24 pilus assembly protein genes and several other genes, which were proposed to be related to the reduction of insoluble Fe(III) oxides. The genes associated with the electron donors and acceptors of strain GSS01(T) were predicted in the genome. Information gained from its sequence will be relevant to the future elucidation of extracellular electron transfer mechanism during the reduction of Fe(III) oxides.
菌株GSS01(T)（=KCTC 4545 = MCCC 1 K00269）是土壤地杆菌（Geobacter soli）的模式菌株。G. soli菌株GSS01(T)因其能够利用多种电子供体还原不溶性Fe(III)氧化物而备受关注。在此，我们描述了该菌株的一些关键特征，以及其全基因组序列和注释。该菌株基因组大小为3,657,100 bp，包含3229个蛋白质编码基因和54个RNA基因，其中包括2个16S rRNA基因。菌株GSS01(T)的基因组包含76个预测的细胞色素基因、24个菌毛组装蛋白基因以及其他几个基因，这些基因被认为与不溶性Fe(III)氧化物的还原有关。在该基因组中预测了与菌株GSS01(T)的电子供体和受体相关的基因。从其序列中获得的信息将有助于未来阐明Fe(III)氧化物还原过程中的细胞外电子转移机制。
