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防御者:利用新型数据分析检测和预测流行病以加强应对

DEFENDER: Detecting and Forecasting Epidemics Using Novel Data-Analytics for Enhanced Response.

作者信息

Thapen Nicholas, Simmie Donal, Hankin Chris, Gillard Joseph

机构信息

Institute for Security Science and Technology, Imperial College London, London, United Kingdom.

Defence Science and Technology Laboratory, Porton Down, Salisbury, United Kingdom.

出版信息

PLoS One. 2016 May 18;11(5):e0155417. doi: 10.1371/journal.pone.0155417. eCollection 2016.

Abstract

In recent years social and news media have increasingly been used to explain patterns in disease activity and progression. Social media data, principally from the Twitter network, has been shown to correlate well with official disease case counts. This fact has been exploited to provide advance warning of outbreak detection, forecasting of disease levels and the ability to predict the likelihood of individuals developing symptoms. In this paper we introduce DEFENDER, a software system that integrates data from social and news media and incorporates algorithms for outbreak detection, situational awareness and forecasting. As part of this system we have developed a technique for creating a location network for any country or region based purely on Twitter data. We also present a disease nowcasting (forecasting the current but still unknown level) approach which leverages counts from multiple symptoms, which was found to improve the nowcasting accuracy by 37 percent over a model that used only previous case data. Finally we attempt to forecast future levels of symptom activity based on observed user movement on Twitter, finding a moderate gain of 5 percent over a time series forecasting model.

摘要

近年来,社会媒体和新闻媒体越来越多地被用于解释疾病活动和进展的模式。主要来自推特网络的社交媒体数据已被证明与官方疾病病例数有很好的相关性。这一事实已被用于提供疾病爆发检测的提前预警、疾病水平预测以及预测个体出现症状的可能性。在本文中,我们介绍了DEFENDER,这是一个软件系统,它整合了来自社会媒体和新闻媒体的数据,并纳入了用于爆发检测、态势感知和预测的算法。作为该系统的一部分,我们开发了一种仅基于推特数据为任何国家或地区创建位置网络的技术。我们还提出了一种疾病即时预报(预测当前但仍未知的水平)方法,该方法利用多种症状的计数,发现与仅使用先前病例数据的模型相比,即时预报准确率提高了37%。最后,我们尝试根据推特上观察到的用户活动来预测未来症状活动水平,发现比时间序列预测模型有5%的适度提升。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e457/4871418/3609a53f97ad/pone.0155417.g001.jpg

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