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Dual use of GTP hydrolysis by elongation factor G on the ribosome.延伸因子G在核糖体上对GTP水解的双重利用。
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Molecular mechanism of viomycin inhibition of peptide elongation in bacteria.紫霉素抑制细菌中肽链延伸的分子机制。
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Fluctuations between multiple EF-G-induced chimeric tRNA states during translocation on the ribosome.在核糖体上易位过程中,多个EF-G诱导的嵌合tRNA状态之间的波动。
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Movement of elongation factor G between compact and extended conformations.延伸因子 G 在紧凑和延伸构象之间的移动。
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Following movement of domain IV of elongation factor G during ribosomal translocation.核糖体易位过程中延伸因子G的结构域IV移动之后。
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How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation.核糖体如何在 EF-G 催化转位过程中将 A 位 tRNA 递交给 P 位。
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Direct measurement of the mechanical work during translocation by the ribosome.核糖体在转位过程中机械功的直接测量。
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EF-G catalyzes tRNA translocation by disrupting interactions between decoding center and codon-anticodon duplex.EF-G 通过破坏解码中心与密码子-反密码子双链体之间的相互作用来催化 tRNA 易位。
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10
The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation.核糖体利用协同构象变化来最大化和调节翻译效率。
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延伸因子G通过动力冲程启动转位。

Elongation factor G initiates translocation through a power stroke.

作者信息

Chen Chunlai, Cui Xiaonan, Beausang John F, Zhang Haibo, Farrell Ian, Cooperman Barry S, Goldman Yale E

机构信息

Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6085; Pennsylvania Muscle Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6083;

Department of Chemistry, University of Pennsylvania, Philadelphia, PA 19104-6323;

出版信息

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7515-20. doi: 10.1073/pnas.1602668113. Epub 2016 Jun 16.

DOI:10.1073/pnas.1602668113
PMID:27313204
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4941437/
Abstract

During the translocation step of prokaryotic protein synthesis, elongation factor G (EF-G), a guanosine triphosphatase (GTPase), binds to the ribosomal PRE-translocation (PRE) complex and facilitates movement of transfer RNAs (tRNAs) and messenger RNA (mRNA) by one codon. Energy liberated by EF-G's GTPase activity is necessary for EF-G to catalyze rapid and precise translocation. Whether this energy is used mainly to drive movements of the tRNAs and mRNA or to foster EF-G dissociation from the ribosome after translocation has been a long-lasting debate. Free EF-G, not bound to the ribosome, adopts quite different structures in its GTP and GDP forms. Structures of EF-G on the ribosome have been visualized at various intermediate steps along the translocation pathway, using antibiotics and nonhydolyzable GTP analogs to block translocation and to prolong the dwell time of EF-G on the ribosome. However, the structural dynamics of EF-G bound to the ribosome have not yet been described during normal, uninhibited translocation. Here, we report the rotational motions of EF-G domains during normal translocation detected by single-molecule polarized total internal reflection fluorescence (polTIRF) microscopy. Our study shows that EF-G has a small (∼10°) global rotational motion relative to the ribosome after GTP hydrolysis that exerts a force to unlock the ribosome. This is followed by a larger rotation within domain III of EF-G before its dissociation from the ribosome.

摘要

在原核生物蛋白质合成的转位步骤中,延伸因子G(EF-G)作为一种鸟苷三磷酸酶(GTPase),与核糖体转位前(PRE)复合物结合,并促进转运RNA(tRNA)和信使RNA(mRNA)移动一个密码子的距离。EF-G的GTPase活性释放的能量对于EF-G催化快速且精确的转位是必需的。这种能量主要是用于驱动tRNA和mRNA的移动,还是用于促进转位后EF-G从核糖体上解离,这一直是个长期争论的问题。未与核糖体结合的游离EF-G在其GTP和GDP形式下具有截然不同的结构。沿着转位途径的各个中间步骤中,利用抗生素和不可水解的GTP类似物来阻断转位并延长EF-G在核糖体上的停留时间,已观察到核糖体上EF-G的结构。然而,在正常的、未受抑制的转位过程中,尚未描述与核糖体结合的EF-G的结构动态。在此,我们报告了通过单分子偏振全内反射荧光(polTIRF)显微镜检测到的正常转位过程中EF-G结构域的旋转运动。我们的研究表明,GTP水解后,EF-G相对于核糖体有一个小的(约10°)整体旋转运动,该运动施加一个力来解锁核糖体。随后,在EF-G从核糖体解离之前,其结构域III内会发生更大的旋转。