State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, China.
Nat Microbiol. 2016 Apr 4;1(6):16035. doi: 10.1038/nmicrobiol.2016.35.
Members of the archaeal phylum Bathyarchaeota are widespread and abundant in the energy-deficient marine subsurface sediments. However, their life strategies have remained largely elusive. Here, we provide genetic evidence that some lineages of Bathyarchaeota are acetogens, being capable of homoacetogenesis, a metabolism so far restricted to the domain Bacteria. Metabolic reconstruction based on genomic bins assembled from the metagenome of deep-sea subsurface sediments shows that the metabolism of some lineages of Bathyarchaeota is similar to that of bona fide bacterial homoacetogens, by having pathways for acetogenesis and for the fermentative utilization of a variety of organic substrates. Heterologous expression and activity assay of the acetate kinase gene ack from Bathyarchaeota, demonstrate further the capability of these Bathyarchaeota to grow as acetogens. The presence and expression of bathyarchaeotal genes indicative of active acetogenesis was also confirmed in Peru Margin subsurface sediments where Bathyarchaeota are abundant. The analyses reveal that this ubiquitous and abundant subsurface archaeal group has adopted a versatile life strategy to make a living under energy-limiting conditions. These findings further expand the metabolic potential of Archaea and argue for a revision of the role of Archaea in the carbon cycle of marine sediments.
古菌门的成员在能量匮乏的海洋底层沉积物中广泛存在且丰富。然而,它们的生活策略在很大程度上仍然难以捉摸。在这里,我们提供了遗传证据表明,一些 Bathyarchaeota 菌系是产乙酸菌,能够进行同型产乙酸作用,这种代谢途径迄今为止仅局限于细菌域。基于从深海底层沉积物宏基因组组装的基因组 bin 进行的代谢重建表明,一些 Bathyarchaeota 菌系的代谢与真正的细菌同型产乙酸菌相似,具有产乙酸作用和利用各种有机底物进行发酵的途径。来自 Bathyarchaeota 的乙酸激酶基因 ack 的异源表达和活性测定进一步证明了这些 Bathyarchaeota 作为产乙酸菌生长的能力。在秘鲁边缘底层沉积物中也证实了这些 Bathyarchaeota 具有活跃的产乙酸作用的 Bathyarchaeotal 基因的存在和表达,这些沉积物中 Bathyarchaeota 丰富。这些分析表明,这个普遍存在且丰富的底层古菌群体已经采用了一种通用的生活策略,在能量限制的条件下生存。这些发现进一步扩展了古菌的代谢潜力,并认为有必要修订古菌在海洋沉积物碳循环中的作用。
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