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CeNDR,即秀丽隐杆线虫自然多样性资源。

CeNDR, the Caenorhabditis elegans natural diversity resource.

作者信息

Cook Daniel E, Zdraljevic Stefan, Roberts Joshua P, Andersen Erik C

机构信息

Interdisciplinary Biological Sciences Program, Northwestern University, Evanston, IL 60208, USA.

Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.

出版信息

Nucleic Acids Res. 2017 Jan 4;45(D1):D650-D657. doi: 10.1093/nar/gkw893. Epub 2016 Oct 3.

Abstract

Studies in model organisms have yielded considerable insights into the etiology of disease and our understanding of evolutionary processes. Caenorhabditis elegans is among the most powerful model organisms used to understand biology. However, C. elegans is not used as extensively as other model organisms to investigate how natural variation shapes traits, especially through the use of genome-wide association (GWA) analyses. Here, we introduce a new platform, the C. elegans Natural Diversity Resource (CeNDR) to enable statistical genetics and genomics studies of C. elegans and to connect the results to human disease. CeNDR provides the research community with wild strains, genome-wide sequence and variant data for every strain, and a GWA mapping portal for studying natural variation in C. elegans Additionally, researchers outside of the C. elegans community can benefit from public mappings and integrated tools for comparative analyses. CeNDR uses several databases that are continually updated through the addition of new strains, sequencing data, and association mapping results. The CeNDR data are accessible through a freely available web portal located at http://www.elegansvariation.org or through an application programming interface.

摘要

对模式生物的研究已使我们对疾病病因以及进化过程有了相当深入的了解。秀丽隐杆线虫是用于理解生物学的最强大模式生物之一。然而,与其他模式生物相比,秀丽隐杆线虫在研究自然变异如何塑造性状方面,尤其是通过全基因组关联(GWA)分析来进行研究时,其使用范围并不广泛。在此,我们引入了一个新平台——秀丽隐杆线虫自然多样性资源库(CeNDR),以开展秀丽隐杆线虫的统计遗传学和基因组学研究,并将研究结果与人类疾病联系起来。CeNDR为研究群体提供野生菌株、每个菌株的全基因组序列和变异数据,以及一个用于研究秀丽隐杆线虫自然变异的GWA定位门户。此外,秀丽隐杆线虫研究群体之外的研究人员可以从公开的定位结果和用于比较分析的集成工具中受益。CeNDR使用多个数据库,这些数据库通过添加新菌株、测序数据和关联定位结果不断更新。CeNDR数据可通过位于http://www.elegansvariation.org的免费网络门户或通过应用程序编程接口获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6e0/5210618/6c3d9521458e/gkw893fig1.jpg

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