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Draft Genome Sequence of Arenibacter sp. Strain C-21, an Iodine-Accumulating Bacterium Isolated from Surface Marine Sediment.

作者信息

Ito Kohei, Nakajima Nobuyoshi, Yamamura Shigeki, Tomita Masaru, Suzuki Haruo, Amachi Seigo

机构信息

Institute for Advanced Biosciences, Keio University, Fujisawa, Kanagawa, Japan.

Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan.

出版信息

Genome Announc. 2016 Oct 13;4(5):e01155-16. doi: 10.1128/genomeA.01155-16.

DOI:10.1128/genomeA.01155-16
PMID:27738047
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5064120/
Abstract

Arenibacter sp. strain C-21, isolated from surface marine sediment of Japan, accumulates iodine in the presence of glucose and iodide (I). We report here the draft genome sequence of this strain to provide insight into the molecular mechanism underlying its iodine-accumulating ability.

摘要

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本文引用的文献

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The Pfam protein families database: towards a more sustainable future.Pfam蛋白质家族数据库：迈向更可持续的未来。
Nucleic Acids Res. 2016 Jan 4;44(D1):D279-85. doi: 10.1093/nar/gkv1344. Epub 2015 Dec 15.
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CDD: NCBI's conserved domain database.CDD：美国国家生物技术信息中心的保守结构域数据库。
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The Vanadium Iodoperoxidase from the marine flavobacteriaceae species Zobellia galactanivorans reveals novel molecular and evolutionary features of halide specificity in the vanadium haloperoxidase enzyme family.来自海洋黄杆菌科物种食半乳聚糖佐贝氏菌的钒碘过氧化物酶揭示了钒卤过氧化物酶家族中卤化物特异性的新分子和进化特征。
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Activities at the Universal Protein Resource (UniProt).通用蛋白质资源库（UniProt）的活动。
Nucleic Acids Res. 2014 Jan;42(Database issue):D191-8. doi: 10.1093/nar/gkt1140. Epub 2013 Nov 18.
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SignalP 4.0: discriminating signal peptides from transmembrane regions.信号肽预测工具SignalP 4.0：区分信号肽与跨膜区域。
Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.
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Microbial contribution to global iodine cycling: volatilization, accumulation, reduction, oxidation, and sorption of iodine.微生物对全球碘循环的贡献：碘的挥发、积累、还原、氧化和吸附。
Microbes Environ. 2008;23(4):269-76. doi: 10.1264/jsme2.me08548.
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Quality control and preprocessing of metagenomic datasets.宏基因组数据集的质量控制和预处理。
Bioinformatics. 2011 Mar 15;27(6):863-4. doi: 10.1093/bioinformatics/btr026. Epub 2011 Jan 28.
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Using the Velvet de novo assembler for short-read sequencing technologies.将Velvet从头组装程序用于短读长测序技术。
Curr Protoc Bioinformatics. 2010 Sep;Chapter 11:Unit 11.5. doi: 10.1002/0471250953.bi1105s31.
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