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与居住在塔拉哈西的非裔美国人血压变异相关的基因位点及新型鉴别指标

Genetic Loci and Novel Discrimination Measures Associated with Blood Pressure Variation in African Americans Living in Tallahassee.

作者信息

Quinlan Jacklyn, Pearson Laurel N, Clukay Christopher J, Mitchell Miaisha M, Boston Qasimah, Gravlee Clarence C, Mulligan Connie J

机构信息

Department of Anthropology, University of Florida, Gainesville, FL, United States of America.

Genetics Institute, University of Florida, Gainesville, FL, United States of America.

出版信息

PLoS One. 2016 Dec 21;11(12):e0167700. doi: 10.1371/journal.pone.0167700. eCollection 2016.

Abstract

Sequencing of the human genome and decades of genetic association and linkage studies have dramatically improved our understanding of the etiology of many diseases. However, the multiple causes of complex diseases are still not well understood, in part because genetic and sociocultural risk factors are not typically investigated concurrently. Hypertension is a leading risk factor for cardiovascular disease and afflicts more African Americans than any other racially defined group in the US. Few genetic loci for hypertension have been replicated across populations, which may reflect population-specific differences in genetic variants and/or inattention to relevant sociocultural factors. Discrimination is a salient sociocultural risk factor for poor health and has been associated with hypertension. Here we use a biocultural approach to study blood pressure (BP) variation in African Americans living in Tallahassee, Florida by genotyping over 30,000 single nucleotide polymorphisms (SNPs) and capturing experiences of discrimination using novel measures of unfair treatment of self and others (n = 157). We perform a joint admixture and genetic association analysis for BP that prioritizes regions of the genome with African ancestry. We only report significant SNPs that were confirmed through our simulation analyses, which were performed to determine the false positive rate. We identify eight significant SNPs in five genes that were previously associated with cardiovascular diseases. When we include measures of unfair treatment and test for interactions between SNPs and unfair treatment, we identify a new class of genes involved in multiple phenotypes including psychosocial distress and mood disorders. Our results suggest that inclusion of culturally relevant stress measures, like unfair treatment in African Americans, may reveal new genes and biological pathways relevant to the etiology of hypertension, and may also improve our understanding of the complexity of gene-environment interactions that underlie complex diseases.

摘要

人类基因组测序以及数十年的基因关联和连锁研究极大地增进了我们对许多疾病病因的理解。然而,复杂疾病的多种病因仍未得到充分了解,部分原因是遗传和社会文化风险因素通常未同时进行研究。高血压是心血管疾病的主要风险因素,在美国,受其影响的非裔美国人比任何其他种族定义的群体都多。很少有高血压的基因位点在不同人群中得到重复验证,这可能反映了遗传变异的人群特异性差异和/或对相关社会文化因素的忽视。歧视是健康状况不佳的一个显著社会文化风险因素,并且与高血压有关。在此,我们采用一种生物文化方法,通过对30000多个单核苷酸多态性(SNP)进行基因分型,并使用新颖的自我和他人不公平待遇测量方法(n = 157)来捕捉歧视经历,研究居住在佛罗里达州塔拉哈西的非裔美国人的血压(BP)变化。我们对BP进行联合混合和基因关联分析,优先考虑具有非洲血统的基因组区域。我们只报告通过模拟分析确认的显著SNP,模拟分析是为了确定假阳性率而进行的。我们在五个先前与心血管疾病相关的基因中鉴定出八个显著的SNP。当我们纳入不公平待遇测量并测试SNP与不公平待遇之间的相互作用时,我们鉴定出一类新的基因,它们涉及包括心理社会困扰和情绪障碍在内的多种表型。我们的结果表明,纳入与文化相关的压力测量,如非裔美国人的不公平待遇,可能会揭示与高血压病因相关的新基因和生物途径,也可能会增进我们对复杂疾病潜在的基因 - 环境相互作用复杂性的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e96/5176163/c95f1adf95f6/pone.0167700.g001.jpg

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