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毛果杨中Dof转录因子的特征及其对渗透胁迫的响应

Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa).

作者信息

Wang Han, Zhao Shicheng, Gao Yuchi, Yang Jingli

机构信息

State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, Heilongjiang, China.

School of Pharmacy, Harbin University of Commerce, Harbin, China.

出版信息

PLoS One. 2017 Jan 17;12(1):e0170210. doi: 10.1371/journal.pone.0170210. eCollection 2017.

Abstract

The DNA-binding One Zinc Finger (Dof) genes are ubiquitous in many plant species and are especial transcription regulators that participate in plant growth, development and various procedures, including biotic and abiotic stress reactions. In this study, we identified 41 PtrDof members from Populus trichocarpa genomes and classified them into four groups. The conserved motifs and gene structures of some PtrDof genes belonging to the same subgroup were almost the same. The 41 PtrDof genes were dispersed on 18 of the 19 Populus chromosomes. Many key stress- or phytohormone-related cis-elements were discovered in the PtrDof gene promoter regions. Consequently, we undertook expression profiling of the PtrDof genes in leaves and roots in response to osmotic stress and abscisic acid. A total of seven genes (PtrDof14, 16, 25, 27, 28, 37 and 39) in the Populus Dof gene family were consistently upregulated at point in all time in the leaves and roots under osmotic and abscisic acid (ABA) stress. We observed that 12 PtrDof genes could be targeted by 15 miRNAs. Moreover, we mapped the cleavage site in PtrDof30 using the 5'RLM-RACE. The results showed that PtrDofs may have a role in resistance to abiotic stress in Populus trichocarpa.

摘要

DNA结合单锌指(Dof)基因在许多植物物种中普遍存在,是参与植物生长、发育以及包括生物和非生物胁迫反应在内的各种过程的特殊转录调节因子。在本研究中,我们从毛果杨基因组中鉴定出41个PtrDof成员,并将它们分为四组。属于同一亚组的一些PtrDof基因的保守基序和基因结构几乎相同。这41个PtrDof基因分布在毛果杨19条染色体中的18条上。在PtrDof基因启动子区域发现了许多与关键胁迫或植物激素相关的顺式作用元件。因此,我们对PtrDof基因在叶片和根中响应渗透胁迫和脱落酸的表达谱进行了分析。在渗透胁迫和脱落酸(ABA)胁迫下,毛果杨Dof基因家族中共有7个基因(PtrDof14、16、25、27、28、37和39)在叶片和根中的所有时间点均持续上调。我们观察到12个PtrDof基因可被15个miRNA靶向。此外,我们使用5'RLM-RACE定位了PtrDof30中的切割位点。结果表明,PtrDofs可能在毛果杨对非生物胁迫的抗性中发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c316/5241002/365eb6af63ad/pone.0170210.g001.jpg

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