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对暗色丝孢真菌致病性的基因组学洞察

Genomic insight into pathogenicity of dematiaceous fungus .

作者信息

Looi Hong Keat, Toh Yue Fen, Yew Su Mei, Na Shiang Ling, Tan Yung-Chie, Chong Pei-Sin, Khoo Jia-Shiun, Yee Wai-Yan, Ng Kee Peng, Kuan Chee Sian

机构信息

Department of Medical Microbiology, University of Malaya , Kuala Lumpur , Malaysia.

Department of Science and Technology, Codon Genomics SB , Seri Kembangan , Selangor , Malaysia.

出版信息

PeerJ. 2017 Jan 26;5:e2841. doi: 10.7717/peerj.2841. eCollection 2017.

Abstract

is a common plant pathogen that causes leaf spot disease in a broad range of crop, and it heavily affect rubber trees in Malaysia (Hsueh, 2011; Nghia et al., 2008). The isolation of UM 591 from a patient's contact lens indicates the pathogenic potential of this dematiaceous fungus in human. However, the underlying factors that contribute to the opportunistic cross-infection have not been fully studied. We employed genome sequencing and gene homology annotations in attempt to identify these factors in UM 591 using data obtained from publicly available bioinformatics databases. The assembly size of UM 591 genome is 41.8 Mbp, and a total of 13,531 (≥99 bp) genes have been predicted. UM 591 is enriched with genes that encode for glycoside hydrolases, carbohydrate esterases, auxiliary activity enzymes and cell wall degrading enzymes. Virulent genes comprising of CAZymes, peptidases, and hypervirulence-associated cutinases were found to be present in the fungal genome. Comparative analysis result shows that UM 591 possesses higher number of carbohydrate esterases family 10 (CE10) CAZymes compared to other species of fungi in this study, and these enzymes hydrolyses wide range of carbohydrate and non-carbohydrate substrates. Putative melanin, siderophore, -kaurene, and lycopene biosynthesis gene clusters are predicted, and these gene clusters denote that UM 591 are capable of protecting itself from the UV and chemical stresses, allowing it to adapt to different environment. Putative sterigmatocystin, HC-toxin, cercosporin, and gliotoxin biosynthesis gene cluster are predicted. This finding have highlighted the necrotrophic and invasive nature of UM 591.

摘要

是一种常见的植物病原体,可在多种作物中引发叶斑病,严重影响马来西亚的橡胶树(Hsueh,2011;Nghia等人,2008)。从患者隐形眼镜中分离出UM 591表明这种暗色真菌对人类具有致病潜力。然而,导致机会性交叉感染的潜在因素尚未得到充分研究。我们采用基因组测序和基因同源性注释,试图利用从公开可用的生物信息学数据库获得的数据来识别UM 591中的这些因素。UM 591基因组的组装大小为41.8 Mbp,共预测到13531个(≥99 bp)基因。UM 591富含编码糖苷水解酶、碳水化合物酯酶、辅助活性酶和细胞壁降解酶的基因。发现真菌基因组中存在由碳水化合物活性酶、肽酶和与超毒力相关的角质酶组成的毒力基因。比较分析结果表明,与本研究中的其他真菌物种相比,UM 591拥有更多数量的碳水化合物酯酶家族10(CE10)碳水化合物活性酶,这些酶可水解多种碳水化合物和非碳水化合物底物。预测了推定的黑色素、铁载体、贝壳杉烯和番茄红素生物合成基因簇,这些基因簇表明UM 591能够保护自身免受紫外线和化学胁迫,使其能够适应不同环境。预测了推定的柄曲霉素、HC毒素、尾孢菌素和胶霉毒素生物合成基因簇。这一发现突出了UM 591的坏死营养和侵袭性本质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c4a/5274520/18a93cc432d4/peerj-05-2841-g001.jpg

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