Watanabe Hiroshi C, Yamashita Yuki, Ishikita Hiroshi
Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan.
Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo 153-8904, Japan.
Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2916-2921. doi: 10.1073/pnas.1617615114. Epub 2017 Mar 6.
In MtrF, an outer-membrane multiheme cytochrome, the 10 heme groups are arranged in heme binding domains II and IV along the pseudo- axis, forming the electron transfer (ET) pathways. Previous reports based on molecular dynamics simulations showed that the redox potential () values for the heme pairs located in symmetrical positions in domains II and IV were similar, forming bidirectional ET pathways [Breuer M, Zarzycki P, Blumberger J, Rosso KM (2012) 134(24):9868-9871]. Here, we present the values of the 10 hemes in MtrF, solving the linear Poisson-Boltzmann equation and considering the protonation states of all titratable residues and heme propionic groups. In contrast to previous studies, the values indicated that the ET is more likely to be downhill from domain IV to II because of localization of acidic residues in domain IV. Reduction of hemes in MtrF lowered the values, resulting in switching to alternative downhill ET pathways that extended to the flavin binding sites. These findings present an explanation of how MtrF serves as an electron donor to extracellular substrates.
在外膜多血红素细胞色素MtrF中,10个血红素基团沿假轴排列在血红素结合结构域II和IV中,形成电子传递(ET)途径。先前基于分子动力学模拟的报告表明,位于结构域II和IV对称位置的血红素对的氧化还原电位()值相似,形成双向ET途径[Breuer M,Zarzycki P,Blumberger J,Rosso KM(2012)134(24):9868 - 9871]。在此,我们通过求解线性泊松 - 玻尔兹曼方程并考虑所有可滴定残基和血红素丙酸基团的质子化状态,给出了MtrF中10个血红素的 值。与先前的研究不同,这些 值表明,由于结构域IV中酸性残基的定位,ET更有可能从结构域IV到II呈下坡趋势。MtrF中血红素的还原降低了 值,导致切换到延伸至黄素结合位点的替代下坡ET途径。这些发现解释了MtrF如何作为细胞外底物的电子供体。