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酵母Ty元件中的保守和非保守特征。

Conserved and non-conserved features among the yeast Ty elements.

作者信息

Stucka R, Hauber J, Feldmann H

机构信息

Institut für Physiologische Chemie, Physikalische Biochemie und Zellbiologie, Universität München, Federal Republic of Germany.

出版信息

Curr Genet. 1986;11(3):193-200. doi: 10.1007/BF00420606.

DOI:10.1007/BF00420606
PMID:2834090
Abstract

We have isolated and characterized a Ty element from a yeast cosmid library which exhibits several unusual features: it is flanked by non-homologous delta elements and directly associated with a singular delta element. A tRNA(Glu3) gene and tRNA(Cys) gene are found in conjunction with this element, located in opposite orientation on either end of it. The sequence information now available for several Ty elements has been used in a detailed comparative analysis to determine conserved features among the Ty elements, preferably between class I elements and a class II element. Highly conserved sequence motifs appear to be located at the borders of particular segments that correspond to the putative protein domains of the Tys. Furthermore, we include a comparison of the best-conserved amino acid homologies for these putative proteins of Ty elements, transposable elements from other organisms and several retroviral proviruses to confirm their close structural resemblance.

摘要

我们从酵母黏粒文库中分离并鉴定了一个Ty元件,它具有几个不同寻常的特征:其两侧是不同源的δ元件,并与一个单一的δ元件直接相关。在该元件的两端发现了一个tRNA(Glu3)基因和一个tRNA(Cys)基因,它们以相反的方向排列。目前可获得的几个Ty元件的序列信息已用于详细的比较分析,以确定Ty元件之间的保守特征,最好是在I类元件和II类元件之间。高度保守的序列基序似乎位于与Tys假定蛋白结构域相对应的特定片段的边界。此外,我们还比较了Ty元件、其他生物的转座元件和几种逆转录病毒前病毒的这些假定蛋白的最佳保守氨基酸同源性,以确认它们在结构上的密切相似性。

相似文献

1
Conserved and non-conserved features among the yeast Ty elements.酵母Ty元件中的保守和非保守特征。
Curr Genet. 1986;11(3):193-200. doi: 10.1007/BF00420606.
2
Nucleotide sequence characterization of Ty 1-17, a class II transposon from yeast.酵母II类转座子Ty 1-17的核苷酸序列特征
Nucleic Acids Res. 1985 Sep 25;13(18):6679-93. doi: 10.1093/nar/13.18.6679.
3
A hot-spot for transposition of various Ty elements on chromosome V in Saccharomyces cerevisiae.酿酒酵母中位于第五条染色体上的各种Ty元件转座热点区域。
Curr Genet. 1989 Oct;16(4):247-52. doi: 10.1007/BF00422110.
4
Nucleotide sequence and characteristics of a Ty element from yeast.酵母中一个Ty元件的核苷酸序列及特征
Nucleic Acids Res. 1985 Apr 25;13(8):2745-58. doi: 10.1093/nar/13.8.2745.
5
A 'hot-spot' for Ty transposition on the left arm of yeast chromosome III.酵母染色体III左臂上Ty转座的一个“热点”。
Nucleic Acids Res. 1986 Apr 25;14(8):3475-85. doi: 10.1093/nar/14.8.3475.
6
Transposable element sequences involved in the enhancement of yeast gene expression.参与增强酵母基因表达的转座元件序列。
Proc Natl Acad Sci U S A. 1985 Aug;82(16):5428-32. doi: 10.1073/pnas.82.16.5428.
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Analysis of yeast chromosomal regions carrying members of the glutamate tRNA gene family: various transposable elements are associated with them.携带谷氨酸tRNA基因家族成员的酵母染色体区域分析:多种转座元件与它们相关联。
Nucleic Acids Res. 1988 Nov 25;16(22):10623-34. doi: 10.1093/nar/16.22.10623.
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Isolation and characterization of a Ty element inserted into the ribosomal DNA of the yeast Saccharomyces cerevisiae.插入酿酒酵母核糖体DNA中的Ty元件的分离与鉴定。
Nucleic Acids Res. 1986 Apr 11;14(7):2939-49. doi: 10.1093/nar/14.7.2939.
9
The Saccharomyces cerevisiae genome contains functional and nonfunctional copies of transposon Ty1.酿酒酵母基因组包含转座子Ty1的功能拷贝和非功能拷贝。
Mol Cell Biol. 1988 Apr;8(4):1432-42. doi: 10.1128/mcb.8.4.1432-1442.1988.
10
Ty4, a novel low-copy number element in Saccharomyces cerevisiae: one copy is located in a cluster of Ty elements and tRNA genes.Ty4,酿酒酵母中的一种新型低拷贝数元件:一个拷贝位于Ty元件和tRNA基因的簇中。
Nucleic Acids Res. 1989 Jul 11;17(13):4993-5001. doi: 10.1093/nar/17.13.4993.

引用本文的文献

1
Transposon tagging using Ty elements in yeast.利用酵母中的Ty元件进行转座子标签法。
Genetics. 1988 Sep;120(1):95-108. doi: 10.1093/genetics/120.1.95.
2
A hot-spot for transposition of various Ty elements on chromosome V in Saccharomyces cerevisiae.酿酒酵母中位于第五条染色体上的各种Ty元件转座热点区域。
Curr Genet. 1989 Oct;16(4):247-52. doi: 10.1007/BF00422110.
3
Analysis of yeast retrotransposon Ty insertions at the CAN1 locus.对CAN1基因座处酵母逆转录转座子Ty插入的分析。

本文引用的文献

1
Delta sequences in the 5' non-coding region of yeast tRNA genes.酵母 tRNA 基因 5'非编码区中的德尔塔序列。
EMBO J. 1983;2(4):583-91. doi: 10.1002/j.1460-2075.1983.tb01467.x.
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Nucleotide sequence of a cloned woodchuck hepatitis virus genome: comparison with the hepatitis B virus sequence.克隆的土拨鼠肝炎病毒基因组的核苷酸序列:与乙肝病毒序列的比较。
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Sequence variation in dispersed repetitive sequences in Saccharomyces cerevisiae.酿酒酵母中分散重复序列的序列变异。
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Identification of four conserved motifs among the RNA-dependent polymerase encoding elements.在RNA依赖性聚合酶编码元件中鉴定出四个保守基序。
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Ty4, a novel low-copy number element in Saccharomyces cerevisiae: one copy is located in a cluster of Ty elements and tRNA genes.Ty4,酿酒酵母中的一种新型低拷贝数元件:一个拷贝位于Ty元件和tRNA基因的簇中。
Nucleic Acids Res. 1989 Jul 11;17(13):4993-5001. doi: 10.1093/nar/17.13.4993.
6
The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins.来自间型脉孢菌菌株Labelle-1b的线粒体质粒含有一个长开放阅读框,其中有逆转录酶和相关蛋白质特有的氨基酸序列块。
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Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition.酿酒酵母反转录转座子Ty的功能组织:转座需要Ty蛋白酶。
Mol Cell Biol. 1988 Apr;8(4):1421-31. doi: 10.1128/mcb.8.4.1421-1431.1988.
8
DNA sequences in chromosomes II and VII code for pyruvate carboxylase isoenzymes in Saccharomyces cerevisiae: analysis of pyruvate carboxylase-deficient strains.酿酒酵母中,II号和VII号染色体上的DNA序列编码丙酮酸羧化酶同工酶:丙酮酸羧化酶缺陷型菌株的分析
Mol Gen Genet. 1991 Oct;229(2):307-15. doi: 10.1007/BF00272171.
9
Characterization of products of TY1-mediated reverse transcription in Saccharomyces cerevisiae.酿酒酵母中TY1介导的逆转录产物的特征分析。
Mol Gen Genet. 1991 Apr;226(1-2):145-53. doi: 10.1007/BF00273598.
10
Proteolytic processing of pol-TYB proteins from the yeast retrotransposon Ty1.酵母逆转录转座子Ty1的pol-TYB蛋白的蛋白水解加工
J Virol. 1991 Sep;65(9):4573-81. doi: 10.1128/JVI.65.9.4573-4581.1991.
J Mol Biol. 1981 Feb 5;145(4):619-32. doi: 10.1016/0022-2836(81)90306-5.
4
Nucleotide sequence of a cloned duck hepatitis B virus genome: comparison with woodchuck and human hepatitis B virus sequences.克隆的鸭乙型肝炎病毒基因组的核苷酸序列:与土拨鼠和人类乙型肝炎病毒序列的比较。
J Virol. 1984 Mar;49(3):782-92. doi: 10.1128/JVI.49.3.782-792.1984.
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Ty1 and delta elements occur adjacent to several tRNA genes in yeast.Ty1和δ元件存在于酵母中几个tRNA基因的相邻位置。
EMBO J. 1982;1(10):1245-50. doi: 10.1002/j.1460-2075.1982.tb00020.x.
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The complete nucleotide sequences of the cloned hepatitis B virus DNA; subtype adr and adw.克隆的乙型肝炎病毒DNA的完整核苷酸序列;adr和adw亚型
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Nucleotide sequence of Rous sarcoma virus.劳氏肉瘤病毒的核苷酸序列。
Cell. 1983 Mar;32(3):853-69. doi: 10.1016/0092-8674(83)90071-5.
8
The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.pUC质粒,一种源自M13mp7的用于插入诱变和使用合成通用引物进行测序的系统。
Gene. 1982 Oct;19(3):259-68. doi: 10.1016/0378-1119(82)90015-4.
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Reversion of a promoter deletion in yeast.酵母中启动子缺失的回复突变
Nature. 1982 Aug 26;298(5877):815-9. doi: 10.1038/298815a0.
10
Delta sequences and double symmetry in a yeast chromosomal replicator region.酵母染色体复制子区域中的δ序列和双重对称性
J Mol Biol. 1982 Apr 5;156(2):293-307. doi: 10.1016/0022-2836(82)90330-8.