Jashnsaz Hossein, Al Juboori Mohammed, Weistuch Corey, Miller Nicholas, Nguyen Tyler, Meyerhoff Viktoria, McCoy Bryan, Perkins Stephanie, Wallgren Ross, Ray Bruce D, Tsekouras Konstantinos, Anderson Gregory G, Pressé Steve
Department of Physics, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Biomedical Engineering, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Biophys J. 2017 Mar 28;112(6):1282-1289. doi: 10.1016/j.bpj.2017.02.011.
The Gram-negative Bdellovibrio bacteriovorus (BV) is a model bacterial predator that hunts other bacteria and may serve as a living antibiotic. Despite over 50 years since its discovery, it is suggested that BV probably collides into its prey at random. It remains unclear to what degree, if any, BV uses chemical cues to target its prey. The targeted search problem by the predator for its prey in three dimensions is a difficult problem: it requires the predator to sensitively detect prey and forecast its mobile prey's future position on the basis of previously detected signal. Here instead we find that rather than chemically detecting prey, hydrodynamics forces BV into regions high in prey density, thereby improving its odds of a chance collision with prey and ultimately reducing BV's search space for prey. We do so by showing that BV's dynamics are strongly influenced by self-generated hydrodynamic flow fields forcing BV onto surfaces and, for large enough defects on surfaces, forcing BV in orbital motion around these defects. Key experimental controls and calculations recapitulate the hydrodynamic origin of these behaviors. While BV's prey (Escherichia coli) are too small to trap BV in hydrodynamic orbit, the prey are also susceptible to their own hydrodynamic fields, substantially confining them to surfaces and defects where mobile predator and prey density is now dramatically enhanced. Colocalization, driven by hydrodynamics, ultimately reduces BV's search space for prey from three to two dimensions (on surfaces) even down to a single dimension (around defects). We conclude that BV's search for individual prey remains random, as suggested in the literature, but confined, however-by generic hydrodynamic forces-to reduced dimensionality.
革兰氏阴性菌食菌蛭弧菌(BV)是一种典型的捕食性细菌,以其他细菌为食,可能可作为一种天然抗生素。尽管自其被发现以来已有50多年,但有观点认为BV可能是随机与猎物碰撞。目前尚不清楚BV在多大程度上(如果有的话)利用化学信号来定位其猎物。捕食者在三维空间中对猎物进行有针对性搜索的问题是一个难题:它要求捕食者灵敏地检测猎物,并根据先前检测到的信号预测其移动猎物的未来位置。相反,我们在此发现,BV并非通过化学方式检测猎物,而是流体动力学将其驱赶到猎物密度高的区域,从而提高其与猎物偶然碰撞的几率,并最终缩小BV搜索猎物的空间。我们通过证明BV的动力学受到自身产生的流体动力流场的强烈影响来做到这一点,这种流场迫使BV附着于表面,并且对于表面上足够大的缺陷,迫使BV围绕这些缺陷做轨道运动。关键的实验对照和计算重现了这些行为的流体动力学起源。虽然BV的猎物(大肠杆菌)太小,无法在流体动力学轨道中捕获BV,但猎物自身也易受其流体动力场的影响,从而基本上将它们限制在表面和缺陷处,此时移动的捕食者和猎物的密度显著增加。由流体动力学驱动的共定位最终将BV搜索猎物的空间从三维缩小到二维(在表面上),甚至缩小到一维(围绕缺陷处)。我们得出结论,正如文献中所指出的,BV对单个猎物的搜索仍然是随机的,但受到一般流体动力的限制,搜索空间维度降低。