Andreani Julien, Khalil Jacques Yaacoub Bou, Sevvana Madhumati, Benamar Samia, Di Pinto Fabrizio, Bitam Idir, Colson Philippe, Klose Thomas, Rossmann Michael G, Raoult Didier, La Scola Bernard
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Universite, UM63, CNRS 7278, IRD 198, INSERM 1095, IHU-Méditerranée Infection, Marseille, France.
Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA.
J Virol. 2017 Jun 26;91(14). doi: 10.1128/JVI.00212-17. Print 2017 Jul 15.
, a double-stranded DNA virus that infects pigs, is the only known member of the family. Nevertheless, during our isolation and sequencing of the complete genome of faustovirus, followed by the description of kaumoebavirus, carried out over the past 2 years, we observed the emergence of previously unknown related viruses within this group of viruses. Here we describe the isolation of pacmanvirus, a fourth member in this group, which is capable of infecting Pacmanvirus A23 has a linear compact genome of 395,405 bp, with a 33.62% G+C content. The pacmanvirus genome harbors 465 genes, with a high coding density. An analysis of reciprocal best hits shows that 31 genes are conserved between , pacmanvirus, faustovirus, and kaumoebavirus. Moreover, the major capsid protein locus of pacmanvirus appears to be different from those of kaumoebavirus and faustovirus. Overall, comparative and genomic analyses reveal the emergence of a new group or cluster of viruses encompassing , faustovirus, pacmanvirus, and kaumoebavirus. Pacmanvirus is a newly discovered icosahedral double-stranded DNA virus that was isolated from an environmental sample by amoeba coculture. We describe herein its structure and replicative cycle, along with genomic analysis and genomic comparisons with previously known viruses. This virus represents the third virus, after faustovirus and kaumoebavirus, that is most closely related to classical representatives of the family. These results highlight the emergence of previously unknown double-stranded DNA viruses which delineate and extend the diversity of a group around the asfarvirus members.
猪圆环病毒是一种感染猪的双链DNA病毒,是圆环病毒科唯一已知的成员。然而,在过去两年我们对法斯托病毒全基因组进行分离和测序,并随后描述考莫埃巴病毒的过程中,我们观察到在这组病毒中出现了以前未知的相关病毒。在这里,我们描述了Pacman病毒的分离,它是这一组中的第四个成员,能够感染……Pacman病毒A23有一个395,405 bp的线性紧凑基因组,G+C含量为33.62%。Pacman病毒基因组包含465个基因,编码密度很高。相互最佳匹配分析表明,在猪圆环病毒、Pacman病毒、法斯托病毒和考莫埃巴病毒之间有31个基因是保守的。此外,Pacman病毒的主要衣壳蛋白位点似乎与考莫埃巴病毒和法斯托病毒的不同。总体而言,比较和基因组分析揭示了一个新的病毒群或簇的出现,包括猪圆环病毒、法斯托病毒、Pacman病毒和考莫埃巴病毒。Pacman病毒是一种新发现的二十面体双链DNA病毒,通过变形虫共培养从环境样本中分离出来。我们在此描述其结构和复制周期,以及基因组分析和与先前已知病毒的基因组比较。这种病毒是继法斯托病毒和考莫埃巴病毒之后,与圆环病毒科经典代表关系最密切的第三种病毒。这些结果突出了以前未知的双链DNA病毒的出现,它们描绘并扩展了围绕非洲猪瘟病毒成员的一组病毒的多样性。