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印度西孟加拉邦巴克雷什瓦尔两个温泉中微生物多样性的比较分析。

Comparative analysis of microbial diversity in two hot springs of Bakreshwar, West Bengal, India.

作者信息

Chaudhuri Biswadeep, Chowdhury Trinath, Chattopadhyay Brajadulal

机构信息

Department of Physics, Jadavpur University, Raja Subodh Chandra Mallick Road, Kolkata 700 032, West Bengal, India.

出版信息

Genom Data. 2017 Apr 27;12:122-129. doi: 10.1016/j.gdata.2017.04.001. eCollection 2017 Jun.

DOI:10.1016/j.gdata.2017.04.001
PMID:28507897
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5423328/
Abstract

Various aspects of hot springs at Bakreshwar (Lat. 23°52'48″N; Long. 87°22'40″E) in West Bengal, India have been investigated since the middle of 20th century, but comprehending the complete diversity and the complexity of the microbial population therein has been in the continuing process. Some of these microorganisms are found to have immense industrial importance. Microbes generally exist in milieus of varying complexities and diversities. Attempting the usually employed cultivation-based techniques in experimentation with those microbes had confronted various limitations. To overcome these limitations a strategy based on high-throughput sequencing of 16S rRNA gene amplicon analysis was employed for studying the differential diversity and the detailed nature of microbial population of the two hot springs of Bakreshwar (54 °C & 65 °C). Paired-end libraries of amplified V-3 hyper-variable 16S rDNA fragments from sets of samples that varied in their contents, ranging from a single bacterium to highly complex communities were sequenced. The comparison revealed the differential aspects in the two hot spring waters; the samples at 54 °C showed the bacterial phylum (65.85%) and (27.24%) predominating and those from hot spring water at 65 °C showed the abundance of the phyla (96.10%) and (3.36%). The presence of Archaea in the hot springs could not be ascertained.

摘要

自20世纪中叶以来,印度西孟加拉邦巴克雷什瓦尔(北纬23°52'48″;东经87°22'40″)温泉的各个方面都得到了研究,但要全面了解其中微生物种群的多样性和复杂性仍在持续进行中。人们发现其中一些微生物具有巨大的工业价值。微生物通常存在于各种复杂多样的环境中。在对这些微生物进行实验时,尝试使用常用的基于培养的技术面临着各种限制。为了克服这些限制,采用了基于16S rRNA基因扩增子高通量测序的策略,来研究巴克雷什瓦尔两个温泉(54°C和65°C)微生物种群的差异多样性和详细特征。对从内容各异的样本组(从单一细菌到高度复杂的群落)中扩增得到的V-3高变区16S rDNA片段进行双端文库测序。比较结果揭示了两个温泉水的差异;54°C的样本中细菌门(65.85%)和(27.24%)占主导,而65°C温泉水的样本中门(96.10%)和(3.36%)含量丰富。温泉中是否存在古菌尚无法确定。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/4801798cbf48/gr6b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/e7b15a619800/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/eff865ecc85d/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/1a8552f4e3e8/t1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/ca5424ec8364/t2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/ce7bc694c588/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/6b4a4db1f1ef/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/92ef0e263dd6/gr5b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/4801798cbf48/gr6b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/e7b15a619800/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/eff865ecc85d/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/1a8552f4e3e8/t1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/ca5424ec8364/t2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/ce7bc694c588/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/6b4a4db1f1ef/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/92ef0e263dd6/gr5b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05ee/5423328/4801798cbf48/gr6b.jpg

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