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新型链霉菌(Streptomyces asenjonii),从极度干旱的阿塔卡马沙漠土壤中分离得到,修订了 1958 年普里德汉姆等人描述的变色链霉菌(Streptomyces viridosporus)。

Streptomyces asenjonii sp. nov., isolated from hyper-arid Atacama Desert soils and emended description of Streptomyces viridosporus Pridham et al. 1958.

机构信息

School of Biology, Newcastle University, Ridley Building 2, Newcastle upon Tyne, NE1 7RU, UK.

National Centre for Agricultural Utilization Research, USDA ARS, Peoria, IL, 61614, USA.

出版信息

Antonie Van Leeuwenhoek. 2017 Sep;110(9):1133-1148. doi: 10.1007/s10482-017-0886-7. Epub 2017 Jun 6.

Abstract

A polyphasic study was undertaken to establish the taxonomic status of Streptomyces strains isolated from hyper-arid Atacama Desert soils. Analysis of the 16S rRNA gene sequences of the isolates showed that they formed a well-defined lineage that was loosely associated with the type strains of several Streptomyces species. Multi-locus sequence analysis based on five housekeeping gene alleles showed that the strains form a homogeneous taxon that is closely related to the type strains of Streptomyces ghanaensis and Streptomyces viridosporus. Representative isolates were shown to have chemotaxonomic and morphological properties consistent with their classification in the genus Streptomyces. The isolates have many phenotypic features in common, some of which distinguish them from S. ghanaensis NRRL B-12104, their near phylogenetic neighbour. On the basis of these genotypic and phenotypic data it is proposed that the isolates be recognised as a new species within the genus Streptomyces, named Streptomyces asenjonii sp. nov. The type strain of the species is KNN35.1b (NCIMB 15082 = NRRL B-65050). Some of the isolates, including the type strain, showed antibacterial activity in standard plug assays. In addition, MLSA, average nucleotide identity and phenotypic data show that the type strains of S. ghanaensis and S. viridosporus belong to the same species. Consequently, it is proposed that the former be recognised as a heterotypic synonym of the latter and an emended description is given for S. viridosporus.

摘要

采用多相分类研究方法来确定从极度干旱的阿塔卡马沙漠土壤中分离出的链霉菌菌株的分类地位。对分离株的 16S rRNA 基因序列分析表明,它们形成了一个明确的谱系,与几种链霉菌模式菌株松散相关。基于五个看家基因等位基因的多位点序列分析表明,这些菌株形成了一个同质性的分类单元,与链霉菌加纳亚种和链霉菌深绿孢子亚种的模式菌株密切相关。代表性分离株具有与它们在链霉菌属中的分类一致的化学分类和形态特征。这些分离株具有许多共同的表型特征,其中一些特征将它们与近缘的链霉菌加纳亚种 NRRL B-12104 区分开来。基于这些基因型和表型数据,建议将这些分离株确认为链霉菌属中的一个新种,命名为链霉菌阿森松亚种。该物种的模式株是 KNN35.1b(NCIMB 15082=NRRL B-65050)。一些分离株,包括模式株,在标准插塞试验中表现出抗菌活性。此外,MLSA、平均核苷酸同一性和表型数据表明,链霉菌加纳亚种和链霉菌深绿孢子亚种的模式菌株属于同一物种。因此,建议将前者作为后者的异型同义词,并对链霉菌深绿孢子亚种进行了修订描述。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a4d2/5559561/c12c171d0924/10482_2017_886_Fig1_HTML.jpg

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